Variant report

Variant	rs3980775
Chromosome Location	chr7:66649986-66649987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 375 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:368)

rs_ID	r²[population]
rs10081276	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081302	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10081331	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10081333	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081344	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10081381	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10155890	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10155918	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155972	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155983	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10156209	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10215275	0.83[ASN][1000 genomes]
rs10228308	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10228714	0.82[ASN][1000 genomes]
rs10230059	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10231586	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10232876	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10232929	0.83[ASN][1000 genomes]
rs10233035	0.83[ASN][1000 genomes]
rs10233183	0.83[ASN][1000 genomes]
rs10233388	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10233507	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10234493	0.82[ASN][1000 genomes]
rs10234659	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10235588	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10238245	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10242431	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10242790	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10242919	0.83[ASN][1000 genomes]
rs10243013	0.82[ASN][1000 genomes]
rs10243217	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10243421	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10246623	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10246747	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10247272	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10248812	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10250113	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10250487	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10251763	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10252143	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10253339	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10254788	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10256139	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10257403	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10257949	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10258678	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10261694	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10262065	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10262150	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10262781	0.87[ASN][1000 genomes]
rs10267300	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10268701	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10270292	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10271374	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10272347	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10272424	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10272591	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273692	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10274165	0.82[ASN][1000 genomes]
rs10274305	0.82[ASN][1000 genomes]
rs10277509	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10280699	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1045053	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1045064	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1045174	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10950062	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10950063	0.82[ASN][1000 genomes]
rs10950064	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11760347	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761027	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11761100	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761577	0.84[EUR][1000 genomes]
rs11763486	0.83[ASN][1000 genomes]
rs11764349	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11764376	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765279	0.83[ASN][1000 genomes]
rs11765283	0.83[ASN][1000 genomes]
rs11766470	0.83[ASN][1000 genomes]
rs11767172	0.82[ASN][1000 genomes]
rs11768675	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11769413	0.83[ASN][1000 genomes]
rs11770086	0.85[ASN][1000 genomes]
rs11770378	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11771227	0.80[ASN][1000 genomes]
rs11771408	0.85[ASN][1000 genomes]
rs11772455	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773012	0.87[ASN][1000 genomes]
rs11773274	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773730	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976638	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12154252	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12154257	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12154409	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12154419	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12154688	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12154886	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12155044	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12155051	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12155261	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12155330	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13222146	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs13225639	0.87[ASN][1000 genomes]
rs13228667	0.80[ASN][1000 genomes]
rs13228872	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13229085	0.87[ASN][1000 genomes]
rs13236735	0.81[EUR][1000 genomes]
rs13236943	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13239980	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13244997	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1581502	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1608581	0.82[EUR][1000 genomes]
rs1608582	0.81[EUR][1000 genomes]
rs17137288	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17139656	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17180957	0.82[JPT][hapmap]
rs17726	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1815098	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1815099	0.80[ASN][1000 genomes]
rs1815100	0.82[ASN][1000 genomes]
rs1815101	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1829931	0.81[ASN][1000 genomes]
rs1880278	0.87[ASN][1000 genomes]
rs1965480	0.87[ASN][1000 genomes]
rs2019826	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2090946	0.84[AMR][1000 genomes]
rs2177496	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2421393	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2421398	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421400	0.84[ASN][1000 genomes]
rs2421401	0.84[ASN][1000 genomes]
rs2421404	0.82[CHB][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421405	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421419	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421425	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2690147	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2690170	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28366417	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28420076	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2844097	0.91[CEU][hapmap]
rs2844157	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2844170	0.81[ASN][1000 genomes]
rs28464901	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28497071	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28502004	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28534521	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28556313	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28620117	0.87[ASN][1000 genomes]
rs28621376	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28651697	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28715521	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28749249	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28750410	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28759371	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28764821	0.81[EUR][1000 genomes]
rs28767482	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28806258	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28808071	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28860910	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28888421	0.85[ASN][1000 genomes]
rs2901424	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901425	0.87[ASN][1000 genomes]
rs2949097	0.82[ASN][1000 genomes]
rs2949109	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3015884	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3107871	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3107873	0.86[EUR][1000 genomes]
rs34145691	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34145957	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34146912	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34176733	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34237838	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34267978	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34317556	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34344363	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34463275	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34471265	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34566330	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34567129	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34574768	0.87[AMR][1000 genomes]
rs34654147	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34762791	0.83[ASN][1000 genomes]
rs34773993	0.81[EUR][1000 genomes]
rs35042775	0.93[ASN][1000 genomes]
rs35048638	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35064061	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35120837	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35122750	0.83[ASN][1000 genomes]
rs35290283	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35325827	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35336066	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35387955	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35399585	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35470341	0.87[ASN][1000 genomes]
rs35521959	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35599428	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35649461	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35669114	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35723315	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35856213	0.83[ASN][1000 genomes]
rs35918453	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35970624	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35982871	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36108108	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3857691	0.83[ASN][1000 genomes]
rs3897072	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3962076	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3980767	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3980776	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3980778	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3980790	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4083135	0.87[ASN][1000 genomes]
rs4101640	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4103731	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4145350	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295533	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4382353	0.87[ASN][1000 genomes]
rs4383874	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4433024	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4486076	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4496851	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4504527	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4524666	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4535609	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4551224	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4552791	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4559131	0.82[EUR][1000 genomes]
rs4593419	0.83[ASN][1000 genomes]
rs4618581	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4621684	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4636084	0.84[EUR][1000 genomes]
rs4717353	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717354	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718463	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718464	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4718469	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718470	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4718471	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4718475	0.90[CEU][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718477	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718478	0.91[EUR][1000 genomes]
rs4718486	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718492	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718493	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718500	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718501	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55756354	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55829112	0.83[ASN][1000 genomes]
rs55921608	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56001319	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56167042	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56397344	0.85[EUR][1000 genomes]
rs59734986	0.83[ASN][1000 genomes]
rs61061833	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61404757	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6460322	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6460325	0.83[ASN][1000 genomes]
rs6460326	0.83[ASN][1000 genomes]
rs6460327	0.83[ASN][1000 genomes]
rs6460328	0.83[ASN][1000 genomes]
rs6460329	0.83[ASN][1000 genomes]
rs6460330	0.80[ASN][1000 genomes]
rs6460333	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66744554	0.80[ASN][1000 genomes]
rs66806481	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66870123	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66908665	0.83[ASN][1000 genomes]
rs66954241	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67650940	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67855845	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67890875	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67902540	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6942913	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6943439	0.90[EUR][1000 genomes]
rs6944637	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6944968	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947110	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947488	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947514	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6948588	0.87[EUR][1000 genomes]
rs6948757	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948793	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6949104	0.83[ASN][1000 genomes]
rs6949429	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6950170	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6951192	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6951468	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6952206	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6952309	0.87[ASN][1000 genomes]
rs6954515	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6954642	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6961084	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6962901	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963793	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6964179	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6966142	0.87[ASN][1000 genomes]
rs6967217	0.82[EUR][1000 genomes]
rs6967381	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6967876	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6969270	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978418	0.83[ASN][1000 genomes]
rs6978789	0.82[ASN][1000 genomes]
rs6978918	0.80[ASN][1000 genomes]
rs6979001	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6979706	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71535637	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71535638	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71563165	0.83[ASN][1000 genomes]
rs71563168	0.83[ASN][1000 genomes]
rs71563178	0.83[EUR][1000 genomes]
rs71563180	0.84[EUR][1000 genomes]
rs71563196	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73135118	0.81[EUR][1000 genomes]
rs73140581	0.91[ASN][1000 genomes]
rs73140602	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73142604	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73142680	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73144526	0.87[ASN][1000 genomes]
rs73377106	0.87[EUR][1000 genomes]
rs7350002	0.82[ASN][1000 genomes]
rs7350057	0.82[ASN][1000 genomes]
rs7357171	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7778900	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7779069	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779596	0.81[ASN][1000 genomes]
rs7780458	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7780700	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781804	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783513	0.82[ASN][1000 genomes]
rs7791271	0.80[ASN][1000 genomes]
rs7791642	0.85[ASN][1000 genomes]
rs7792212	0.85[ASN][1000 genomes]
rs7792907	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7793101	0.85[ASN][1000 genomes]
rs7793104	0.83[ASN][1000 genomes]
rs7794130	0.83[ASN][1000 genomes]
rs7795390	0.83[ASN][1000 genomes]
rs7795976	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7796133	0.85[ASN][1000 genomes]
rs7797608	0.83[ASN][1000 genomes]
rs7804802	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7809415	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7809649	0.80[ASN][1000 genomes]
rs7811122	0.81[ASN][1000 genomes]
rs7811233	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7811268	0.83[ASN][1000 genomes]
rs9654771	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9654851	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9654853	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9654854	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9654859	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9690083	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9690120	0.87[ASN][1000 genomes]
rs9690121	0.87[ASN][1000 genomes]
rs9690145	0.87[ASN][1000 genomes]
rs9690839	0.82[ASN][1000 genomes]
rs9691404	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9692192	0.82[ASN][1000 genomes]
rs9692279	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9692303	0.87[ASN][1000 genomes]
rs9769387	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9886204	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886206	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886263	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886290	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886306	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886326	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9986784	0.89[EUR][1000 genomes]
rs9986995	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	esv2422035	chr7:66621964-66676630	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs3980775	TYW1	cis	Nerve Tibial	GTEx
rs3980775	TYW1	cis	Muscle Skeletal	GTEx
rs3980775	TYW1	cis	Esophagus Mucosa	GTEx
rs3980775	GS1-124K5.4	cis	Nerve Tibial	GTEx
rs3980775	TYW1	cis	Heart Left Ventricle	GTEx
rs3980775	TYW1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66621600-66672000	Weak transcription	Fetal Intestine Large	intestine
2	chr7:66628600-66684600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:66629000-66650200	Weak transcription	Fetal Thymus	thymus
4	chr7:66640600-66677200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:66641800-66654000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:66643000-66660000	Weak transcription	Dnd41	blood
7	chr7:66643200-66654200	Weak transcription	Pancreas	Pancrea
8	chr7:66644400-66659400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:66644400-66683000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:66644600-66654400	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:66644600-66659400	Weak transcription	Fetal Intestine Small	intestine
12	chr7:66644800-66654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:66644800-66660200	Weak transcription	Adipose Nuclei	Adipose
14	chr7:66645000-66657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:66645000-66660000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:66645800-66655600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:66645800-66660000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:66647000-66677400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:66647200-66654200	Weak transcription	Left Ventricle	heart
20	chr7:66647600-66657800	Weak transcription	Right Atrium	heart
21	chr7:66647600-66661400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:66647800-66659800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:66647800-66660000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:66648200-66650200	Weak transcription	HSMM	muscle
25	chr7:66648200-66654200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:66648200-66654200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:66648200-66679800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:66648800-66667200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:66649000-66650600	Enhancers	Fetal Lung	lung
30	chr7:66649000-66658200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:66649200-66650200	Weak transcription	K562	blood
32	chr7:66649200-66650800	Enhancers	GM12878-XiMat	blood
33	chr7:66649200-66677200	Weak transcription	Right Ventricle	heart
34	chr7:66649200-66679200	Weak transcription	NHEK	skin
35	chr7:66649600-66654400	Weak transcription	Primary T cells from cord blood	blood
36	chr7:66649800-66650200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

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