Variant report
Variant | rs35042775 |
---|---|
Chromosome Location | chr7:66646385-66646386 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10081276 | 0.80[ASN][1000 genomes] |
rs10081302 | 0.84[ASN][1000 genomes] |
rs10081331 | 0.82[ASN][1000 genomes] |
rs10081333 | 0.80[ASN][1000 genomes] |
rs10081344 | 0.80[ASN][1000 genomes] |
rs10081381 | 0.82[ASN][1000 genomes] |
rs10155918 | 0.84[ASN][1000 genomes] |
rs10155972 | 0.84[ASN][1000 genomes] |
rs10155983 | 0.82[ASN][1000 genomes] |
rs10156209 | 0.82[ASN][1000 genomes] |
rs10230059 | 0.80[ASN][1000 genomes] |
rs10231586 | 0.90[ASN][1000 genomes] |
rs10233507 | 0.80[ASN][1000 genomes] |
rs10235588 | 0.91[ASN][1000 genomes] |
rs10242431 | 0.80[ASN][1000 genomes] |
rs10243217 | 0.86[ASN][1000 genomes] |
rs10243421 | 0.84[ASN][1000 genomes] |
rs10246747 | 0.90[ASN][1000 genomes] |
rs10247272 | 0.80[ASN][1000 genomes] |
rs10248812 | 0.80[ASN][1000 genomes] |
rs10250113 | 0.88[ASN][1000 genomes] |
rs10250487 | 0.91[ASN][1000 genomes] |
rs10251763 | 0.89[ASN][1000 genomes] |
rs10252143 | 0.89[ASN][1000 genomes] |
rs10253339 | 0.82[ASN][1000 genomes] |
rs10254788 | 0.84[ASN][1000 genomes] |
rs10256139 | 0.89[ASN][1000 genomes] |
rs10257949 | 0.89[ASN][1000 genomes] |
rs10258678 | 0.80[ASN][1000 genomes] |
rs10262150 | 0.86[ASN][1000 genomes] |
rs10262781 | 0.80[ASN][1000 genomes] |
rs10267300 | 0.89[ASN][1000 genomes] |
rs10272347 | 0.89[ASN][1000 genomes] |
rs10272591 | 0.89[ASN][1000 genomes] |
rs10280699 | 0.83[ASN][1000 genomes] |
rs1045053 | 0.80[ASN][1000 genomes] |
rs1045064 | 0.80[ASN][1000 genomes] |
rs1045174 | 0.80[ASN][1000 genomes] |
rs10950062 | 0.80[ASN][1000 genomes] |
rs10950064 | 0.80[ASN][1000 genomes] |
rs11760347 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs11761027 | 0.83[ASN][1000 genomes] |
rs11761100 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs11763378 | 0.81[AFR][1000 genomes] |
rs11764349 | 0.80[ASN][1000 genomes] |
rs11764376 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs11766203 | 0.86[ASN][1000 genomes] |
rs11768675 | 0.80[ASN][1000 genomes] |
rs11770378 | 0.83[ASN][1000 genomes] |
rs11772455 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs11773274 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs11773730 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs11976638 | 0.80[ASN][1000 genomes] |
rs12154252 | 0.80[ASN][1000 genomes] |
rs12154257 | 0.80[ASN][1000 genomes] |
rs12154409 | 0.82[ASN][1000 genomes] |
rs12154419 | 0.85[ASN][1000 genomes] |
rs12154886 | 0.80[ASN][1000 genomes] |
rs12155044 | 0.86[ASN][1000 genomes] |
rs12155051 | 0.89[ASN][1000 genomes] |
rs12155261 | 0.80[ASN][1000 genomes] |
rs12155330 | 0.80[ASN][1000 genomes] |
rs13225639 | 0.80[ASN][1000 genomes] |
rs13228872 | 0.80[ASN][1000 genomes] |
rs13229085 | 0.80[ASN][1000 genomes] |
rs13239980 | 0.80[ASN][1000 genomes] |
rs13244997 | 0.84[ASN][1000 genomes] |
rs1581502 | 0.80[ASN][1000 genomes] |
rs17139656 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs17726 | 0.80[ASN][1000 genomes] |
rs1815101 | 0.80[ASN][1000 genomes] |
rs1880278 | 0.80[ASN][1000 genomes] |
rs1965480 | 0.88[ASN][1000 genomes] |
rs2019826 | 0.80[ASN][1000 genomes] |
rs2177496 | 0.80[ASN][1000 genomes] |
rs2421393 | 0.81[ASN][1000 genomes] |
rs2421398 | 0.84[ASN][1000 genomes] |
rs2421401 | 0.81[ASN][1000 genomes] |
rs2421404 | 0.93[ASN][1000 genomes] |
rs2421405 | 0.91[ASN][1000 genomes] |
rs2421419 | 0.86[ASN][1000 genomes] |
rs28366417 | 0.89[ASN][1000 genomes] |
rs28420076 | 0.80[ASN][1000 genomes] |
rs2844157 | 0.85[ASN][1000 genomes] |
rs28464901 | 0.80[ASN][1000 genomes] |
rs28497071 | 0.80[ASN][1000 genomes] |
rs28502004 | 0.80[ASN][1000 genomes] |
rs28534521 | 0.89[ASN][1000 genomes] |
rs28556313 | 0.80[ASN][1000 genomes] |
rs28620117 | 0.80[ASN][1000 genomes] |
rs28715521 | 0.82[ASN][1000 genomes] |
rs28749249 | 0.80[ASN][1000 genomes] |
rs28750410 | 0.80[ASN][1000 genomes] |
rs28759371 | 0.80[ASN][1000 genomes] |
rs28767482 | 0.80[ASN][1000 genomes] |
rs28806258 | 0.80[ASN][1000 genomes] |
rs28808071 | 0.80[ASN][1000 genomes] |
rs28860910 | 0.80[ASN][1000 genomes] |
rs2901424 | 0.84[ASN][1000 genomes] |
rs2901425 | 0.80[ASN][1000 genomes] |
rs2949109 | 0.80[ASN][1000 genomes] |
rs3015884 | 0.85[ASN][1000 genomes] |
rs34145691 | 0.89[ASN][1000 genomes] |
rs34145957 | 0.80[ASN][1000 genomes] |
rs34146912 | 0.84[ASN][1000 genomes] |
rs34176733 | 0.84[ASN][1000 genomes] |
rs34237838 | 0.80[ASN][1000 genomes] |
rs34267978 | 0.80[ASN][1000 genomes] |
rs34317556 | 0.83[ASN][1000 genomes] |
rs34463275 | 0.80[ASN][1000 genomes] |
rs34471265 | 0.80[ASN][1000 genomes] |
rs34567129 | 0.80[ASN][1000 genomes] |
rs34654147 | 0.89[ASN][1000 genomes] |
rs35048638 | 0.89[ASN][1000 genomes] |
rs35064061 | 0.80[ASN][1000 genomes] |
rs35120837 | 0.84[ASN][1000 genomes] |
rs35290283 | 0.84[ASN][1000 genomes] |
rs35325827 | 0.80[ASN][1000 genomes] |
rs35336066 | 0.80[ASN][1000 genomes] |
rs35387955 | 0.80[ASN][1000 genomes] |
rs35399585 | 0.80[ASN][1000 genomes] |
rs35470341 | 0.80[ASN][1000 genomes] |
rs35599428 | 0.80[ASN][1000 genomes] |
rs35649461 | 0.80[ASN][1000 genomes] |
rs35669114 | 0.80[ASN][1000 genomes] |
rs35918453 | 0.80[ASN][1000 genomes] |
rs35970624 | 0.80[ASN][1000 genomes] |
rs35982871 | 0.84[ASN][1000 genomes] |
rs36108108 | 0.89[ASN][1000 genomes] |
rs3897072 | 0.80[ASN][1000 genomes] |
rs3962076 | 0.89[ASN][1000 genomes] |
rs3980767 | 0.89[ASN][1000 genomes] |
rs3980775 | 0.93[ASN][1000 genomes] |
rs3980776 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs3980778 | 0.86[ASN][1000 genomes] |
rs3980790 | 0.84[ASN][1000 genomes] |
rs4083135 | 0.80[ASN][1000 genomes] |
rs4101640 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs4103731 | 0.80[ASN][1000 genomes] |
rs4145350 | 0.93[ASN][1000 genomes] |
rs4295533 | 0.86[ASN][1000 genomes] |
rs4383874 | 0.80[ASN][1000 genomes] |
rs4433024 | 0.84[ASN][1000 genomes] |
rs4486076 | 0.80[ASN][1000 genomes] |
rs4504527 | 0.80[ASN][1000 genomes] |
rs4524666 | 0.80[ASN][1000 genomes] |
rs4535609 | 0.80[ASN][1000 genomes] |
rs4551224 | 0.89[ASN][1000 genomes] |
rs4552791 | 0.85[ASN][1000 genomes] |
rs4618581 | 0.89[ASN][1000 genomes] |
rs4621684 | 0.89[ASN][1000 genomes] |
rs4717353 | 0.89[ASN][1000 genomes] |
rs4717354 | 0.80[ASN][1000 genomes] |
rs4718463 | 0.89[ASN][1000 genomes] |
rs4718464 | 0.84[ASN][1000 genomes] |
rs4718469 | 0.82[ASN][1000 genomes] |
rs4718470 | 0.86[ASN][1000 genomes] |
rs4718471 | 0.86[ASN][1000 genomes] |
rs4718475 | 0.80[ASN][1000 genomes] |
rs4718477 | 0.80[ASN][1000 genomes] |
rs4718486 | 0.80[ASN][1000 genomes] |
rs4718492 | 0.80[ASN][1000 genomes] |
rs4718493 | 0.80[ASN][1000 genomes] |
rs4718500 | 0.80[ASN][1000 genomes] |
rs55756354 | 0.88[ASN][1000 genomes] |
rs55921608 | 0.82[ASN][1000 genomes] |
rs56001319 | 0.84[ASN][1000 genomes] |
rs56167042 | 0.80[ASN][1000 genomes] |
rs61061833 | 0.82[ASN][1000 genomes] |
rs61404757 | 0.80[ASN][1000 genomes] |
rs6460333 | 0.80[ASN][1000 genomes] |
rs66806481 | 0.80[ASN][1000 genomes] |
rs66870123 | 0.80[ASN][1000 genomes] |
rs66954241 | 0.80[ASN][1000 genomes] |
rs67650940 | 0.80[ASN][1000 genomes] |
rs67855845 | 0.89[ASN][1000 genomes] |
rs67902540 | 0.80[ASN][1000 genomes] |
rs6942913 | 0.80[ASN][1000 genomes] |
rs6944637 | 0.80[ASN][1000 genomes] |
rs6944968 | 0.80[ASN][1000 genomes] |
rs6947110 | 0.80[ASN][1000 genomes] |
rs6947488 | 0.80[ASN][1000 genomes] |
rs6948757 | 0.80[ASN][1000 genomes] |
rs6949429 | 0.80[ASN][1000 genomes] |
rs6951468 | 0.80[ASN][1000 genomes] |
rs6952309 | 0.80[ASN][1000 genomes] |
rs6954515 | 0.80[ASN][1000 genomes] |
rs6954642 | 0.80[ASN][1000 genomes] |
rs6961084 | 0.80[ASN][1000 genomes] |
rs6962901 | 0.80[ASN][1000 genomes] |
rs6966142 | 0.80[ASN][1000 genomes] |
rs6967381 | 0.80[ASN][1000 genomes] |
rs6967876 | 0.80[ASN][1000 genomes] |
rs6969270 | 0.80[ASN][1000 genomes] |
rs6979706 | 0.80[ASN][1000 genomes] |
rs71535637 | 0.88[ASN][1000 genomes] |
rs71535638 | 0.91[ASN][1000 genomes] |
rs71563196 | 0.80[ASN][1000 genomes] |
rs73140581 | 0.88[ASN][1000 genomes] |
rs73140602 | 0.89[ASN][1000 genomes] |
rs73142604 | 0.89[ASN][1000 genomes] |
rs73142680 | 0.80[ASN][1000 genomes] |
rs73144526 | 0.80[ASN][1000 genomes] |
rs7357171 | 0.80[ASN][1000 genomes] |
rs7779069 | 0.80[ASN][1000 genomes] |
rs7780700 | 0.93[ASN][1000 genomes] |
rs7781804 | 0.93[ASN][1000 genomes] |
rs7792907 | 0.80[ASN][1000 genomes] |
rs7795976 | 0.80[ASN][1000 genomes] |
rs7809415 | 0.80[ASN][1000 genomes] |
rs9654771 | 0.89[ASN][1000 genomes] |
rs9654851 | 0.91[ASN][1000 genomes] |
rs9654853 | 0.89[ASN][1000 genomes] |
rs9654854 | 0.89[ASN][1000 genomes] |
rs9690083 | 0.80[ASN][1000 genomes] |
rs9690120 | 0.80[ASN][1000 genomes] |
rs9690121 | 0.80[ASN][1000 genomes] |
rs9690145 | 0.80[ASN][1000 genomes] |
rs9692279 | 0.80[ASN][1000 genomes] |
rs9692303 | 0.80[ASN][1000 genomes] |
rs9769387 | 0.80[ASN][1000 genomes] |
rs9886204 | 0.84[ASN][1000 genomes] |
rs9886206 | 0.84[ASN][1000 genomes] |
rs9886263 | 0.84[ASN][1000 genomes] |
rs9886290 | 0.84[ASN][1000 genomes] |
rs9886306 | 0.84[ASN][1000 genomes] |
rs9886326 | 0.84[ASN][1000 genomes] |
rs9986995 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758118 | chr7:66401430-66859253 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
2 | esv2759535 | chr7:66401430-66859253 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
3 | nsv888330 | chr7:66502171-66877880 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 39 gene(s) | inside rSNPs | diseases |
4 | nsv831019 | chr7:66516808-66720485 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA | 9 gene(s) | inside rSNPs | diseases |
5 | esv2422035 | chr7:66621964-66676630 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1032237 | chr7:66644492-66785029 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs35042775 | TYW1 | Cis_1M | lymphoblastoid | RTeQTL |
rs35042775 | TYW1 | cis | Esophagus Mucosa | GTEx |
rs35042775 | TYW1 | cis | Muscle Skeletal | GTEx |
rs35042775 | STAG3L4 | cis | Nerve Tibial | GTEx |
rs35042775 | TYW1 | cis | Heart Left Ventricle | GTEx |
rs35042775 | TYW1 | cis | Nerve Tibial | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:66621600-66672000 | Weak transcription | Fetal Intestine Large | intestine |
2 | chr7:66628600-66684600 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
3 | chr7:66629000-66650200 | Weak transcription | Fetal Thymus | thymus |
4 | chr7:66640600-66677200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
5 | chr7:66641800-66654000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
6 | chr7:66643000-66660000 | Weak transcription | Dnd41 | blood |
7 | chr7:66643200-66654200 | Weak transcription | Pancreas | Pancrea |
8 | chr7:66644400-66659400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
9 | chr7:66644400-66683000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
10 | chr7:66644600-66647600 | Weak transcription | HMEC | breast |
11 | chr7:66644600-66654400 | Weak transcription | Fetal Muscle Leg | muscle |
12 | chr7:66644600-66659400 | Weak transcription | Fetal Intestine Small | intestine |
13 | chr7:66644800-66654000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
14 | chr7:66644800-66660200 | Weak transcription | Adipose Nuclei | Adipose |
15 | chr7:66645000-66657600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
16 | chr7:66645000-66660000 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
17 | chr7:66645200-66647400 | Weak transcription | Fetal Lung | lung |
18 | chr7:66645800-66655600 | Weak transcription | Primary T cells fromperipheralblood | blood |
19 | chr7:66645800-66660000 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |