Variant report

Variant	rs4718486
Chromosome Location	chr7:66688289-66688290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 259 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:253)

rs_ID	r²[population]
rs10081276	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10081302	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10081331	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10081333	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10081344	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10081381	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10230059	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232876	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10233388	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10233507	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10235586	0.84[ASN][1000 genomes]
rs10235588	0.80[ASN][1000 genomes]
rs10242431	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243217	0.80[ASN][1000 genomes]
rs10243421	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10246623	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10247272	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10248812	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250487	0.80[ASN][1000 genomes]
rs10251763	0.83[ASN][1000 genomes]
rs10252143	0.83[ASN][1000 genomes]
rs10253681	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10254788	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10256139	0.83[ASN][1000 genomes]
rs10257403	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10257949	0.83[ASN][1000 genomes]
rs10258678	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261694	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10262065	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10262150	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10267300	0.83[ASN][1000 genomes]
rs10272347	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272424	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10272591	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10273692	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10277509	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1045053	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045064	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1045174	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950062	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10950063	0.87[ASN][1000 genomes]
rs10950064	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11760347	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11761100	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11762199	0.84[AMR][1000 genomes]
rs11764349	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764376	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11766470	0.96[ASN][1000 genomes]
rs11767172	0.95[ASN][1000 genomes]
rs11768675	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771408	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11772455	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11773274	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11773730	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11976638	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12154252	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154257	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154688	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154886	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155044	0.80[ASN][1000 genomes]
rs12155051	0.83[ASN][1000 genomes]
rs12155261	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155330	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13228667	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13228872	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236735	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13236943	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13239980	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13244997	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1581502	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608581	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1608582	0.86[EUR][1000 genomes]
rs17139656	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17726	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815101	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916854	0.82[AFR][1000 genomes]
rs2019826	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177496	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421393	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421398	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421404	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2421405	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2421419	0.80[ASN][1000 genomes]
rs2421425	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28366417	0.83[ASN][1000 genomes]
rs28373153	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28420076	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464901	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497071	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502004	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534521	0.83[ASN][1000 genomes]
rs28556313	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28621376	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28749249	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28750410	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759371	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28764821	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28767482	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28806258	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28808071	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28860910	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879443	0.81[AFR][1000 genomes]
rs2901424	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2949097	0.82[ASN][1000 genomes]
rs2949109	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34145691	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34145957	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34146912	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34176733	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34237838	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34267978	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463275	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34471265	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566330	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34567129	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34574768	0.81[ASN][1000 genomes]
rs34654147	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34773993	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35042775	0.80[ASN][1000 genomes]
rs35048638	0.83[ASN][1000 genomes]
rs35064061	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35120837	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35290283	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35325827	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35336066	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35387955	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35399585	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35507085	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35521959	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35599428	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35649461	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35669114	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35723315	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35918453	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35970624	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35982871	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36108108	0.83[ASN][1000 genomes]
rs3897072	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3962076	0.83[ASN][1000 genomes]
rs3980767	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3980775	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3980776	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3980778	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3980790	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4101640	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4103731	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145350	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4295533	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4383874	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433024	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4486076	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496851	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504527	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4524666	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535609	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551224	0.83[ASN][1000 genomes]
rs4552791	0.80[EUR][1000 genomes]
rs4618581	0.83[ASN][1000 genomes]
rs4621684	0.83[ASN][1000 genomes]
rs4636084	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4717353	0.83[ASN][1000 genomes]
rs4717354	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4718463	0.83[ASN][1000 genomes]
rs4718470	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4718471	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4718475	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718477	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718478	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4718488	0.87[AMR][1000 genomes]
rs4718492	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718493	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718500	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718501	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55756354	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55921608	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56001319	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56167042	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397344	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56785837	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58848117	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59194611	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61061833	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61404757	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460333	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66806481	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66870123	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66954241	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66988535	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67650940	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67855845	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67890875	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67902540	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942913	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943439	0.86[EUR][1000 genomes]
rs6944637	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944968	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947110	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947488	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6948588	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6948757	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948793	0.81[EUR][1000 genomes]
rs6949429	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951468	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952206	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6954515	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954642	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961084	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962901	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963793	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6964179	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967217	0.80[EUR][1000 genomes]
rs6967381	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967876	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969270	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979001	0.85[ASN][1000 genomes]
rs6979706	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535638	0.80[ASN][1000 genomes]
rs71563196	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135118	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73140602	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73142604	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73142680	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144526	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357171	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778900	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7779069	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780700	0.87[ASN][1000 genomes]
rs7781804	0.87[ASN][1000 genomes]
rs7791642	0.98[ASN][1000 genomes]
rs7792907	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795390	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7795976	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796196	0.82[AFR][1000 genomes]
rs7801032	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7809415	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811233	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9654771	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654851	0.80[ASN][1000 genomes]
rs9654853	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654854	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654859	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9690083	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9691404	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9692279	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9769387	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886204	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886206	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886263	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886290	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886306	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886326	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9986784	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9986995	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4718486	TYW1	cis	Muscle Skeletal	GTEx
rs4718486	TYW1	Cis_1M	lymphoblastoid	RTeQTL
rs4718486	TYW1	cis	Nerve Tibial	GTEx
rs4718486	TYW1	cis	Heart Left Ventricle	GTEx
rs4718486	TYW1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66654600-66704600	Weak transcription	Gastric	stomach
2	chr7:66654600-66709600	Weak transcription	Lung	lung
3	chr7:66658000-66703200	Weak transcription	Ovary	ovary
4	chr7:66658600-66691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:66660600-66701600	Weak transcription	Fetal Kidney	kidney
6	chr7:66660600-66703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:66665600-66706800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:66665800-66703400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:66670600-66713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:66674000-66691400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:66675800-66693800	Weak transcription	Fetal Lung	lung
13	chr7:66675800-66706600	Weak transcription	Aorta	Aorta
14	chr7:66675800-66706800	Weak transcription	Primary T cells from cord blood	blood
15	chr7:66676000-66690200	Weak transcription	K562	blood
16	chr7:66676000-66691000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:66676000-66702800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:66677200-66688600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:66678400-66688600	Weak transcription	Left Ventricle	heart
20	chr7:66685000-66717000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:66687000-66688800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:66687000-66706800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:66687800-66688400	ZNF genes & repeats	Dnd41	blood
24	chr7:66687800-66696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:66688000-66688400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr7:66688000-66688400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:66688000-66688400	Enhancers	HSMM	muscle
28	chr7:66688000-66688600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr7:66688000-66688600	Enhancers	HSMMtube	muscle
30	chr7:66688200-66688800	Enhancers	NHEK	skin
31	chr7:66688200-66688800	Enhancers	NHLF	lung
32	chr7:66688200-66706800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links