Variant report

Variant	rs10232298
Chromosome Location	chr7:127219417-127219418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127205094..127207792-chr7:127216829..127219729,3	MCF-7	breast:
2	chr7:127031260..127033206-chr7:127217303..127220181,2	MCF-7	breast:
3	7:127009457-127018926..7:127216013-127221502	GM12878	blood:
4	chr7:127217600..127219465-chr7:127231455..127234407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12706812	0.89[JPT][hapmap]
rs13223469	0.89[JPT][hapmap]
rs1361946	0.90[JPT][hapmap]
rs17150937	0.89[JPT][hapmap]
rs327518	0.81[ASW][hapmap];0.83[GIH][hapmap];1.00[YRI][hapmap]
rs3735643	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950973	0.89[JPT][hapmap]
rs6967408	0.89[JPT][hapmap]
rs806217	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3475393	chr7:127213016-127219714	Strong transcription Genic enhancers Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv971145	chr7:127215275-127220784	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127200600-127221400	Weak transcription	Pancreas	Pancrea
2	chr7:127203400-127220400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:127203600-127221400	Weak transcription	Left Ventricle	heart
4	chr7:127204400-127221000	Weak transcription	Aorta	Aorta
5	chr7:127204800-127219800	Weak transcription	Liver	Liver
6	chr7:127208800-127221000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:127209600-127221600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:127210200-127221600	Weak transcription	Small Intestine	intestine
9	chr7:127210400-127219600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:127210400-127221000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:127210600-127221000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:127212600-127219800	Weak transcription	Brain Substantia Nigra	brain
13	chr7:127212800-127221400	Weak transcription	Spleen	Spleen
14	chr7:127213000-127221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:127213400-127220800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:127213400-127221000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:127213400-127221400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:127213600-127221000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:127214000-127220400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:127214600-127222000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:127214800-127221000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:127215000-127222000	Strong transcription	Fetal Muscle Leg	muscle
23	chr7:127215200-127221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:127215200-127221200	Weak transcription	HMEC	breast
25	chr7:127215200-127221400	Weak transcription	Fetal Intestine Small	intestine
26	chr7:127215600-127220400	Weak transcription	Brain Angular Gyrus	brain
27	chr7:127215800-127220800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:127215800-127221200	Weak transcription	Gastric	stomach
29	chr7:127216200-127222000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:127216800-127219600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:127216800-127220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:127216800-127221200	Weak transcription	HUVEC	blood vessel
33	chr7:127216800-127222200	Weak transcription	Stomach Mucosa	stomach
34	chr7:127217000-127221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:127217200-127221200	Weak transcription	Ovary	ovary
36	chr7:127217400-127220600	Strong transcription	Primary T cells from cord blood	blood
37	chr7:127217600-127221000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr7:127217600-127221400	Strong transcription	Fetal Thymus	thymus
39	chr7:127218000-127219600	Weak transcription	Colonic Mucosa	Colon
40	chr7:127218000-127219800	Strong transcription	Esophagus	oesophagus
41	chr7:127218000-127219800	Strong transcription	Fetal Stomach	stomach
42	chr7:127218000-127220200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr7:127218000-127220200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:127218000-127220400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:127218000-127221000	Strong transcription	Placenta	Placenta
46	chr7:127218000-127221600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr7:127218000-127221800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr7:127218000-127222000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:127218000-127222000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:127218000-127222200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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