Variant report

Variant	rs806217
Chromosome Location	chr7:127238868-127238869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127228470..127230122-chr7:127238051..127240651,2	MCF-7	breast:
2	chr7:127238135..127238968-chr7:127849554..127850375,4	MCF-7	breast:
3	chr7:127238051..127238964-chr7:127269066..127269762,2	MCF-7	breast:
4	chr7:127231980..127236049-chr7:127238788..127242912,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000179562	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10232298	0.86[AMR][1000 genomes]
rs327518	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3735643	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127229600-127241000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:127231600-127241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:127232000-127240600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:127232000-127240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:127232000-127240800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
8	chr7:127232200-127240000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:127232200-127240800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:127232200-127241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:127232200-127241000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:127232200-127241600	Weak transcription	Adipose Nuclei	Adipose
13	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
14	chr7:127232400-127240400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:127232800-127240800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
17	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127236000-127241000	Weak transcription	Pancreas	Pancrea
20	chr7:127238400-127241200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:127238400-127241800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:127238600-127240800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:127238600-127241000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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