Variant report

Variant	rs10233371
Chromosome Location	chr7:53725366-53725367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10234842	0.83[EUR][1000 genomes]
rs10239883	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10272964	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238282	0.82[EUR][1000 genomes]
rs17135895	0.80[EUR][1000 genomes]
rs766069	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7808784	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53724400-53725800	Enhancers	NHEK	skin
2	chr7:53724600-53725400	Enhancers	Fetal Heart	heart
3	chr7:53724600-53725800	Enhancers	HMEC	breast
4	chr7:53724800-53725400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:53725000-53725600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:53725200-53726800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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