Variant report

Variant	rs10272964
Chromosome Location	chr7:53711808-53711809
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10233371	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10234842	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10239883	0.81[EUR][1000 genomes]
rs11238282	0.80[EUR][1000 genomes]
rs12667499	0.81[EUR][1000 genomes]
rs17135895	0.82[EUR][1000 genomes]
rs2193605	0.83[AFR][1000 genomes]
rs2216398	0.83[AFR][1000 genomes]
rs6593095	0.83[AFR][1000 genomes]
rs6951709	0.83[AFR][1000 genomes]
rs6955553	0.83[AFR][1000 genomes]
rs766069	0.82[EUR][1000 genomes]
rs7808784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53710000-53712400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:53710200-53712400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:53710200-53712600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:53710400-53712000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:53711400-53712200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:53711600-53712600	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links