Variant report

Variant	rs10233410
Chromosome Location	chr7:116657913-116657914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr7:116657822-116658244	K562	blood:	n/a	n/a
2	STAT3	chr7:116657814-116658509	MCF10A-Er-Src	breast:	n/a	n/a
3	JUN	chr7:116654077-116661129	K562	blood:	n/a	chr7:116659439-116659450 chr7:116656699-116656711
4	MYC	chr7:116656581-116657925	K562	blood:	n/a	n/a
5	RCOR1	chr7:116657076-116658450	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116589691..116599368-chr7:116647062..116658963,30	K562	blood:
2	7:115847372-115857098..7:116657331-116659879	Hela-S3	cervix:
3	7:116657331-116659879..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
4	7:116657331-116659879..7:116754962-116765597	GM12878	blood:
5	chr7:116657348..116659036-chr7:116675681..116678662,2	K562	blood:

Variant related genes	Relation type
ST7	TF binding region
ENSG00000227199	Chromatin interaction
ENSG00000105989	Chromatin interaction
ENSG00000214188	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10228703	0.82[YRI][hapmap]
rs10241002	0.92[AFR][1000 genomes]
rs10251673	0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10259701	0.82[YRI][hapmap]
rs10261102	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10275342	0.86[YRI][hapmap]
rs17139275	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17438522	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs28428685	1.00[AFR][1000 genomes]
rs28437308	1.00[AFR][1000 genomes]
rs28573769	1.00[AFR][1000 genomes]
rs28595493	1.00[AFR][1000 genomes]
rs28875777	0.94[AFR][1000 genomes]
rs73475024	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527321	chr7:116635048-116660803	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116635800-116660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:116639800-116660000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:116650800-116659600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:116651200-116660000	Weak transcription	Ovary	ovary
5	chr7:116651400-116660000	Weak transcription	Left Ventricle	heart
6	chr7:116651800-116660000	Weak transcription	Right Ventricle	heart
7	chr7:116655000-116659600	Weak transcription	Brain Angular Gyrus	brain
8	chr7:116655000-116660000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:116655000-116660000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:116655000-116660000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:116655000-116660000	Weak transcription	HSMM	muscle
12	chr7:116655000-116660800	Weak transcription	Small Intestine	intestine
13	chr7:116655200-116659400	Weak transcription	NH-A	brain
14	chr7:116655200-116659600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:116655200-116659600	Weak transcription	HUVEC	blood vessel
16	chr7:116655200-116660000	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:116655200-116660000	Weak transcription	Psoas Muscle	Psoas
18	chr7:116655200-116660000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:116655400-116659600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:116655400-116659600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:116655600-116658000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:116655600-116659800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:116655600-116659800	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:116655600-116660000	Weak transcription	Osteobl	bone
25	chr7:116655600-116663000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:116655800-116658000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:116655800-116658200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr7:116655800-116659400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:116655800-116659600	Weak transcription	NHDF-Ad	bronchial
30	chr7:116655800-116659800	Enhancers	Fetal Heart	heart
31	chr7:116655800-116659800	Weak transcription	Fetal Lung	lung
32	chr7:116655800-116660000	Weak transcription	Adipose Nuclei	Adipose
33	chr7:116655800-116660000	Weak transcription	Right Atrium	heart
34	chr7:116655800-116662800	Weak transcription	Primary T cells from cord blood	blood
35	chr7:116656000-116658000	Weak transcription	NHEK	skin
36	chr7:116656000-116658400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr7:116656000-116659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:116656000-116660000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:116656000-116660000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:116656200-116658000	Weak transcription	HMEC	breast
41	chr7:116656200-116659400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:116656200-116659800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:116656200-116659800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:116656400-116660200	Weak transcription	Liver	Liver
45	chr7:116656800-116658400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:116657000-116659000	Flanking Active TSS	K562	blood
47	chr7:116657000-116660000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:116657200-116658200	Enhancers	Brain Anterior Caudate	brain
49	chr7:116657200-116659200	Flanking Active TSS	GM12878-XiMat	blood
50	chr7:116657400-116658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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