Variant report

Variant	rs10241002
Chromosome Location	chr7:116689328-116689329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116687584..116691057-chr7:116694285..116697315,3	K562	blood:
2	chr7:116687584..116690373-chr7:116694285..116696304,2	K562	blood:

rs_ID	r²[population]
rs10233410	0.92[AFR][1000 genomes]
rs10261102	0.90[AFR][1000 genomes]
rs17139275	0.95[AFR][1000 genomes]
rs17438522	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28428685	0.92[AFR][1000 genomes]
rs28437308	0.92[AFR][1000 genomes]
rs28573769	0.92[AFR][1000 genomes]
rs28595493	0.92[AFR][1000 genomes]
rs28875777	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57013377	0.81[AFR][1000 genomes]
rs73475024	0.92[AFR][1000 genomes]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116675400-116691800	Weak transcription	Ovary	ovary
2	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
4	chr7:116682200-116690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:116682200-116691400	Weak transcription	Osteobl	bone
6	chr7:116684200-116689800	Weak transcription	NHDF-Ad	bronchial
7	chr7:116685800-116689600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:116686000-116689800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr7:116686400-116691400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:116686600-116690800	Weak transcription	Left Ventricle	heart
11	chr7:116686600-116691400	Weak transcription	Pancreas	Pancrea
12	chr7:116686600-116691400	Weak transcription	Right Atrium	heart
13	chr7:116686600-116701200	Weak transcription	HSMMtube	muscle
14	chr7:116686800-116689600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:116686800-116691400	Weak transcription	Brain Anterior Caudate	brain
16	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:116687400-116691200	Weak transcription	Brain Angular Gyrus	brain
18	chr7:116687600-116690000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr7:116687600-116690000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr7:116687800-116689400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:116687800-116689400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr7:116687800-116691400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:116688000-116690200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr7:116688000-116691400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:116688000-116691600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:116688000-116691600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:116688000-116694600	Weak transcription	Brain Germinal Matrix	brain
28	chr7:116688000-116697000	Weak transcription	Fetal Lung	lung
29	chr7:116688200-116689400	Enhancers	Small Intestine	intestine
30	chr7:116688200-116690000	Enhancers	Fetal Thymus	thymus
31	chr7:116688200-116691600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:116688200-116693200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:116688400-116689400	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr7:116688400-116689600	Enhancers	Primary hematopoietic stem cells	blood
35	chr7:116688400-116692400	Enhancers	Colon Smooth Muscle	Colon
36	chr7:116688600-116689400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr7:116688600-116689400	Flanking Active TSS	GM12878-XiMat	blood
38	chr7:116688600-116689400	Enhancers	HepG2	liver
39	chr7:116688600-116689400	Enhancers	HUVEC	blood vessel
40	chr7:116688600-116689600	Enhancers	Thymus	Thymus
41	chr7:116688600-116689800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:116688600-116689800	Enhancers	Dnd41	blood
43	chr7:116688600-116690000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr7:116688600-116690000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr7:116688600-116690000	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr7:116688600-116690000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:116688600-116690000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr7:116688600-116690000	Enhancers	Fetal Heart	heart
49	chr7:116688600-116690400	Enhancers	Primary T cells fromperipheralblood	blood
50	chr7:116688600-116692200	Enhancers	Psoas Muscle	Psoas

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