Variant report

Variant	rs57013377
Chromosome Location	chr7:116676113-116676114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:116673925..116679714-chr7:116680423..116685011,12	K562	blood:
2	chr7:116675966..116676873-chr7:116764472..116765435,4	MCF-7	breast:
3	chr7:116592853..116594381-chr7:116674876..116677261,2	K562	blood:
4	chr7:116657348..116659036-chr7:116675681..116678662,2	K562	blood:
5	chr7:116660331..116662113-chr7:116674978..116676956,2	MCF-7	breast:
6	chr7:116674998..116677128-chr7:116725796..116728489,2	MCF-7	breast:
7	chr7:116666668..116671169-chr7:116672583..116677847,7	K562	blood:
8	chr7:116676062..116676562-chr7:116764505..116765176,2	MCF-7	breast:
9	chr7:116675966..116676900-chr7:116764271..116765435,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000214188	Chromatin interaction

rs_ID	r²[population]
rs10228703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236117	0.93[AFR][1000 genomes]
rs10241002	0.81[AFR][1000 genomes]
rs10251673	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10259701	0.95[AFR][1000 genomes]
rs10275342	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17139321	0.84[AFR][1000 genomes]
rs73472894	0.95[AFR][1000 genomes]
rs73475024	0.83[AMR][1000 genomes]
rs73475046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116665800-116680600	Weak transcription	Osteobl	bone
2	chr7:116666200-116680400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:116667000-116681000	Weak transcription	NH-A	brain
4	chr7:116667200-116680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:116671600-116676200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:116671600-116676200	Weak transcription	Brain Substantia Nigra	brain
7	chr7:116671600-116676200	Weak transcription	Fetal Brain Male	brain
8	chr7:116671600-116677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:116671600-116677000	Weak transcription	GM12878-XiMat	blood
10	chr7:116671600-116680200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:116672200-116676200	Weak transcription	Psoas Muscle	Psoas
12	chr7:116674000-116676600	Enhancers	HUVEC	blood vessel
13	chr7:116674000-116677400	Weak transcription	Aorta	Aorta
14	chr7:116674000-116677400	Enhancers	Brain Germinal Matrix	brain
15	chr7:116674200-116676200	Weak transcription	Right Atrium	heart
16	chr7:116674200-116677000	Weak transcription	Pancreas	Pancrea
17	chr7:116674200-116681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:116674200-116685400	Weak transcription	HMEC	breast
19	chr7:116674400-116677000	Enhancers	Colon Smooth Muscle	Colon
20	chr7:116674600-116676800	Enhancers	Fetal Lung	lung
21	chr7:116674800-116676400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:116674800-116676400	Enhancers	Rectal Smooth Muscle	rectum
23	chr7:116674800-116676600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:116674800-116677200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:116674800-116677200	Enhancers	Brain Anterior Caudate	brain
26	chr7:116674800-116686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:116675000-116676200	Weak transcription	Fetal Brain Female	brain
28	chr7:116675000-116680000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:116675200-116676200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:116675200-116676400	Enhancers	Fetal Stomach	stomach
31	chr7:116675200-116676800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:116675200-116677600	Enhancers	Brain Hippocampus Middle	brain
33	chr7:116675200-116683200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:116675400-116676600	Weak transcription	HSMMtube	muscle
35	chr7:116675400-116680600	Weak transcription	NHDF-Ad	bronchial
36	chr7:116675400-116680800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:116675400-116685400	Weak transcription	Left Ventricle	heart
38	chr7:116675400-116691800	Weak transcription	Ovary	ovary
39	chr7:116675600-116676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:116675600-116676800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr7:116675800-116677200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr7:116676000-116676200	Enhancers	Brain Cingulate Gyrus	brain
43	chr7:116676000-116676600	Enhancers	K562	blood
44	chr7:116676000-116677200	Enhancers	Fetal Heart	heart
45	chr7:116676000-116677400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr7:116676000-116677600	Enhancers	Brain Angular Gyrus	brain

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