Variant report

Variant	rs17139321
Chromosome Location	chr7:116724459-116724460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116500954-116503335..7:116718723-116724481	Hela-S3	cervix:
2	7:116604327-116608063..7:116718723-116724481	Hela-S3	cervix:
3	7:116718723-116724481..7:116728195-116740907	Hela-S3	cervix:
4	7:116718723-116724481..7:116754962-116765597	Hela-S3	cervix:
5	chr7:116722664..116726472-chr7:116726852..116728868,3	K562	blood:
6	chr7:116718399..116721102-chr7:116722630..116724611,2	K562	blood:
7	chr7:116715536..116721619-chr7:116722630..116728302,6	K562	blood:
8	7:116718723-116724481..7:117511043-117514740	Hela-S3	cervix:
9	7:115847372-115857098..7:116718723-116724481	Hela-S3	cervix:
10	7:115861595-115870968..7:116718723-116724481	Hela-S3	cervix:
11	chr7:116713287..116715288-chr7:116722498..116724919,2	K562	blood:
12	7:116718723-116724481..7:116957165-116964911	H1-hESC	embryonic stem cell:	embryo
13	7:115890993-115892266..7:116718723-116724481	H1-hESC	embryonic stem cell:	embryo
14	chr7:116698651..116700265-chr7:116724390..116727193,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000226367	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000077063	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000105989	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10228703	0.94[YRI][hapmap]
rs10236117	0.91[AFR][1000 genomes]
rs10251673	1.00[YRI][hapmap]
rs10259701	0.93[YRI][hapmap]
rs10262342	0.86[YRI][hapmap]
rs10266895	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275342	0.93[YRI][hapmap]
rs16870030	1.00[CEU][hapmap]
rs17139357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17139383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17438522	0.82[YRI][hapmap]
rs2301996	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28473267	0.81[AFR][1000 genomes]
rs3758628	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808217	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3808220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57013377	0.84[AFR][1000 genomes]
rs73475046	0.81[AFR][1000 genomes]
rs73477374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116713200-116730800	Weak transcription	Aorta	Aorta
2	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:116716800-116725400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:116716800-116727800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:116717000-116727000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:116717200-116725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:116717200-116727800	Weak transcription	Right Atrium	heart
8	chr7:116717200-116744400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:116717400-116736200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:116717600-116730400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:116718200-116725400	Weak transcription	Fetal Brain Male	brain
12	chr7:116721800-116725400	Weak transcription	GM12878-XiMat	blood
13	chr7:116722000-116724600	Enhancers	Fetal Muscle Leg	muscle
14	chr7:116722200-116724600	Weak transcription	HSMMtube	muscle
15	chr7:116722400-116725200	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:116723000-116730200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:116723000-116738000	Weak transcription	NHLF	lung
18	chr7:116723200-116724600	Enhancers	Fetal Thymus	thymus
19	chr7:116723200-116724800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:116723200-116738000	Weak transcription	Ovary	ovary
21	chr7:116723400-116724600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:116723400-116724600	Enhancers	Gastric	stomach
23	chr7:116723400-116724600	Enhancers	Psoas Muscle	Psoas
24	chr7:116723400-116724600	Enhancers	Stomach Mucosa	stomach
25	chr7:116723800-116724600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:116723800-116724800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:116723800-116724800	Enhancers	Brain Germinal Matrix	brain
28	chr7:116723800-116725000	Enhancers	HMEC	breast
29	chr7:116723800-116725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:116723800-116725400	Enhancers	NHEK	skin
31	chr7:116723800-116725800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:116723800-116725800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:116724000-116725600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:116724000-116726800	Weak transcription	Placenta	Placenta
35	chr7:116724000-116727000	Weak transcription	Left Ventricle	heart
36	chr7:116724000-116727800	Weak transcription	Small Intestine	intestine
37	chr7:116724000-116730400	Weak transcription	Lung	lung
38	chr7:116724200-116724600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr7:116724200-116724600	Enhancers	Pancreas	Pancrea
40	chr7:116724200-116724600	Enhancers	K562	blood
41	chr7:116724200-116725200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:116724200-116725200	Weak transcription	HSMM	muscle
43	chr7:116724200-116725400	Weak transcription	Fetal Brain Female	brain
44	chr7:116724200-116731000	Weak transcription	Brain Angular Gyrus	brain
45	chr7:116724200-116744200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:116724400-116724600	Enhancers	Fetal Heart	heart
47	chr7:116724400-116725400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr7:116724400-116725400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:116724400-116725400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr7:116724400-116726800	Weak transcription	Primary T cells from cord blood	blood

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