Variant report

Variant	rs10262342
Chromosome Location	chr7:116687331-116687332
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116682586..116684476-chr7:116685425..116687752,2	MCF-7	breast:

rs_ID	r²[population]
rs10228703	0.93[YRI][hapmap]
rs10251673	0.92[YRI][hapmap]
rs10259701	0.92[YRI][hapmap]
rs10275342	1.00[YRI][hapmap]
rs17139321	0.86[YRI][hapmap]
rs17139357	0.92[YRI][hapmap]
rs17438522	0.81[YRI][hapmap]
rs3808217	0.92[YRI][hapmap]
rs3808220	0.92[YRI][hapmap]

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116675400-116691800	Weak transcription	Ovary	ovary
2	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
3	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
4	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
6	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
7	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
9	chr7:116681200-116687600	Weak transcription	NHLF	lung
10	chr7:116682200-116690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:116682200-116691400	Weak transcription	Osteobl	bone
12	chr7:116682800-116687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:116683800-116687400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:116683800-116687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:116684200-116687600	Weak transcription	Adipose Nuclei	Adipose
16	chr7:116684200-116689800	Weak transcription	NHDF-Ad	bronchial
17	chr7:116685000-116687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:116685200-116688600	Weak transcription	HepG2	liver
19	chr7:116685200-116688800	Weak transcription	Right Ventricle	heart
20	chr7:116685800-116688000	Enhancers	Colon Smooth Muscle	Colon
21	chr7:116685800-116688200	Enhancers	Fetal Heart	heart
22	chr7:116685800-116689600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:116686000-116689800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:116686400-116687400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:116686400-116687400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:116686400-116687600	Enhancers	Fetal Brain Female	brain
27	chr7:116686400-116688800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:116686400-116691400	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:116686600-116687600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr7:116686600-116687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:116686600-116688800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:116686600-116690800	Weak transcription	Left Ventricle	heart
33	chr7:116686600-116691400	Weak transcription	Pancreas	Pancrea
34	chr7:116686600-116691400	Weak transcription	Right Atrium	heart
35	chr7:116686600-116701200	Weak transcription	HSMMtube	muscle
36	chr7:116686800-116687600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:116686800-116687800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:116686800-116689600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:116686800-116691400	Weak transcription	Brain Anterior Caudate	brain
40	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr7:116687000-116687400	Weak transcription	GM12878-XiMat	blood
42	chr7:116687000-116687400	Weak transcription	K562	blood
43	chr7:116687000-116689200	Enhancers	Liver	Liver
44	chr7:116687200-116687400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:116687200-116687400	Enhancers	Brain Angular Gyrus	brain
46	chr7:116687200-116688000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:116687200-116688000	Enhancers	Brain Germinal Matrix	brain
48	chr7:116687200-116688200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:116687200-116688200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:116687200-116689000	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links