Variant report

Variant	rs73477374
Chromosome Location	chr7:116737380-116737381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116728195-116740907..7:117341506-117356953	Hela-S3	cervix:
2	7:116580605-116585719..7:116728195-116740907	GM12878	blood:
3	chr7:116731419..116733598-chr7:116734784..116738104,4	K562	blood:
4	chr7:116658121..116660442-chr7:116737370..116739171,2	K562	blood:
5	chr7:116731236..116733598-chr7:116735179..116739600,3	K562	blood:

Variant related genes	Relation type
ENSG00000222150	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10266895	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17139321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17139357	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17139383	0.88[ASN][1000 genomes]
rs2301996	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758628	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3808217	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3808220	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116717200-116744400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:116723000-116738000	Weak transcription	NHLF	lung
3	chr7:116723200-116738000	Weak transcription	Ovary	ovary
4	chr7:116724200-116744200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:116724400-116750400	Weak transcription	Fetal Lung	lung
6	chr7:116725400-116766400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:116727200-116738000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:116727800-116737600	Weak transcription	HepG2	liver
9	chr7:116728200-116738000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:116728200-116738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:116728200-116738000	Weak transcription	HSMMtube	muscle
12	chr7:116728200-116738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:116728200-116738200	Weak transcription	Spleen	Spleen
14	chr7:116728200-116741000	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:116728200-116750600	Weak transcription	Small Intestine	intestine
16	chr7:116729200-116738000	Weak transcription	Stomach Mucosa	stomach
17	chr7:116730600-116738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:116730600-116738200	Weak transcription	Brain Anterior Caudate	brain
19	chr7:116731000-116738400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:116731200-116738000	Weak transcription	Aorta	Aorta
21	chr7:116731200-116738200	Weak transcription	Esophagus	oesophagus
22	chr7:116731400-116749000	Weak transcription	Fetal Brain Female	brain
23	chr7:116731800-116740800	Weak transcription	GM12878-XiMat	blood
24	chr7:116732000-116738200	Weak transcription	Gastric	stomach
25	chr7:116732200-116750400	Weak transcription	Fetal Intestine Small	intestine
26	chr7:116732400-116738200	Weak transcription	Left Ventricle	heart
27	chr7:116733000-116738000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:116733000-116738200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:116733000-116741000	Weak transcription	K562	blood
30	chr7:116733400-116738000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:116733400-116738000	Weak transcription	NHDF-Ad	bronchial
32	chr7:116734200-116738000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:116734800-116744000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr7:116734800-116750400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:116735400-116738200	Weak transcription	Right Atrium	heart
36	chr7:116735400-116750400	Weak transcription	Psoas Muscle	Psoas
37	chr7:116735800-116738000	Weak transcription	Right Ventricle	heart
38	chr7:116736200-116737400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:116736600-116737400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:116736600-116738000	Weak transcription	Pancreas	Pancrea
41	chr7:116736800-116737400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr7:116736800-116741600	Weak transcription	Brain Substantia Nigra	brain
43	chr7:116736800-116741800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:116736800-116742200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:116736800-116749000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:116737000-116749800	Weak transcription	Fetal Heart	heart
47	chr7:116737000-116750600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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