Variant report

Variant	rs3758628
Chromosome Location	chr7:116701808-116701809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:116698389-116701885	GM12878	blood:
2	chr7:116701593..116703694-chr7:116704475..116707125,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10255165	0.82[YRI][hapmap]
rs10266895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16870030	1.00[CEU][hapmap]
rs17139321	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17139357	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs17139383	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2301996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808217	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs3808220	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs6961817	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs73477374	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797217	0.82[YRI][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116691800-116702000	Weak transcription	Pancreas	Pancrea
4	chr7:116692200-116702000	Weak transcription	Psoas Muscle	Psoas
5	chr7:116692400-116704600	Weak transcription	GM12878-XiMat	blood
6	chr7:116693800-116709000	Weak transcription	Right Atrium	heart
7	chr7:116700400-116709000	Weak transcription	Aorta	Aorta
8	chr7:116701200-116702000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:116701200-116702000	Enhancers	Osteobl	bone
10	chr7:116701200-116702400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:116701200-116702400	Enhancers	Brain Germinal Matrix	brain
12	chr7:116701200-116702400	Enhancers	HSMMtube	muscle
13	chr7:116701200-116702600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:116701200-116702600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:116701200-116702600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:116701200-116702600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:116701200-116703000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:116701400-116705600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:116701600-116702000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:116701600-116703000	Enhancers	NHDF-Ad	bronchial
21	chr7:116701800-116702200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:116701800-116702400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:116701800-116702400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:116701800-116702400	Enhancers	NHLF	lung
25	chr7:116701800-116702600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:116701800-116703000	Enhancers	NH-A	brain
27	chr7:116701800-116707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links