Variant report

Variant	rs6961817
Chromosome Location	chr7:116709570-116709571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116703686..116706153-chr7:116708300..116710896,2	K562	blood:

rs_ID	r²[population]
rs10255165	0.92[CHB][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10265129	0.86[ASN][1000 genomes]
rs17139331	0.87[CEU][hapmap]
rs2188694	0.87[CEU][hapmap]
rs28519509	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3758628	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs739557	0.87[CEU][hapmap]
rs7457973	0.92[CHB][hapmap]
rs7797217	0.92[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:116690600-116711600	Weak transcription	K562	blood
3	chr7:116702200-116712600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:116702400-116711600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:116702400-116711600	Weak transcription	HMEC	breast
6	chr7:116702400-116712800	Weak transcription	Gastric	stomach
7	chr7:116702400-116712800	Weak transcription	HSMMtube	muscle
8	chr7:116703000-116712800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:116704800-116712400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:116706200-116711600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:116706400-116712600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:116706800-116712800	Weak transcription	Lung	lung
13	chr7:116707200-116712600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:116707400-116709800	Enhancers	Colon Smooth Muscle	Colon
15	chr7:116707600-116712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:116707800-116711800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:116707800-116712400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:116708000-116711800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:116708000-116712400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:116708000-116712800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:116708200-116710400	Enhancers	Fetal Heart	heart
22	chr7:116708200-116712600	Weak transcription	Osteobl	bone
23	chr7:116708200-116712800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:116708400-116710200	Enhancers	Fetal Brain Male	brain
25	chr7:116708400-116710400	Enhancers	Fetal Brain Female	brain
26	chr7:116708600-116709800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr7:116708600-116710000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr7:116708600-116710000	Enhancers	Brain Angular Gyrus	brain
29	chr7:116708600-116710000	Enhancers	Fetal Muscle Leg	muscle
30	chr7:116708600-116710000	Enhancers	Ovary	ovary
31	chr7:116708600-116710200	Enhancers	Brain Hippocampus Middle	brain
32	chr7:116708600-116710600	Enhancers	Brain Cingulate Gyrus	brain
33	chr7:116708800-116709800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr7:116708800-116710400	Enhancers	Liver	Liver
35	chr7:116709000-116709600	Weak transcription	Fetal Kidney	kidney
36	chr7:116709000-116709600	Weak transcription	GM12878-XiMat	blood
37	chr7:116709000-116709800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr7:116709000-116709800	Enhancers	Right Ventricle	heart
39	chr7:116709000-116710000	Enhancers	Brain Substantia Nigra	brain
40	chr7:116709000-116710000	Enhancers	Fetal Intestine Large	intestine
41	chr7:116709000-116710400	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr7:116709000-116710400	Enhancers	A549	lung
43	chr7:116709000-116711000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr7:116709000-116711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:116709000-116711600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:116709000-116711600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:116709000-116712600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:116709000-116712800	Weak transcription	Thymus	Thymus
49	chr7:116709000-116712800	Weak transcription	HSMM	muscle
50	chr7:116709200-116709600	Weak transcription	Aorta	Aorta

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