Variant report

Variant	rs10255165
Chromosome Location	chr7:116686293-116686294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116682586..116684476-chr7:116685425..116687752,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10265129	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12164064	0.80[ASN][1000 genomes]
rs28519509	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758628	0.82[YRI][hapmap]
rs6961817	0.92[CHB][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7457973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap]
rs7797217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116675400-116691800	Weak transcription	Ovary	ovary
2	chr7:116676400-116687400	Weak transcription	Fetal Stomach	stomach
3	chr7:116676400-116688600	Weak transcription	Psoas Muscle	Psoas
4	chr7:116676600-116688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:116676800-116687600	Weak transcription	Fetal Lung	lung
6	chr7:116677000-116688200	Weak transcription	Small Intestine	intestine
7	chr7:116677200-116686400	Weak transcription	Fetal Brain Female	brain
8	chr7:116677200-116691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:116677400-116686600	Weak transcription	Fetal Brain Male	brain
10	chr7:116677600-116691400	Weak transcription	Aorta	Aorta
11	chr7:116678800-116687200	Weak transcription	Brain Germinal Matrix	brain
12	chr7:116681200-116687600	Weak transcription	NHLF	lung
13	chr7:116682200-116690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:116682200-116691400	Weak transcription	Osteobl	bone
15	chr7:116682800-116687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:116683600-116687200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:116683800-116686800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:116683800-116687400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:116683800-116687600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:116684200-116687200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:116684200-116687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:116684200-116687600	Weak transcription	Adipose Nuclei	Adipose
23	chr7:116684200-116689800	Weak transcription	NHDF-Ad	bronchial
24	chr7:116684800-116686400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:116685000-116687000	Enhancers	K562	blood
26	chr7:116685000-116687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:116685200-116688600	Weak transcription	HepG2	liver
28	chr7:116685200-116688800	Weak transcription	Right Ventricle	heart
29	chr7:116685400-116686400	Enhancers	HMEC	breast
30	chr7:116685600-116687000	Enhancers	GM12878-XiMat	blood
31	chr7:116685800-116686600	Enhancers	HSMMtube	muscle
32	chr7:116685800-116686800	Enhancers	Rectal Smooth Muscle	rectum
33	chr7:116685800-116688000	Enhancers	Colon Smooth Muscle	Colon
34	chr7:116685800-116688200	Enhancers	Fetal Heart	heart
35	chr7:116685800-116689600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr7:116686000-116686400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:116686000-116686600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:116686000-116686600	Enhancers	Left Ventricle	heart
39	chr7:116686000-116686800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr7:116686000-116687000	Weak transcription	Liver	Liver
41	chr7:116686000-116689800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr7:116686200-116686400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
43	chr7:116686200-116686400	Enhancers	Brain Hippocampus Middle	brain
44	chr7:116686200-116686400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:116686200-116686400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr7:116686200-116686600	Enhancers	Fetal Muscle Leg	muscle
47	chr7:116686200-116686600	Enhancers	Pancreas	Pancrea
48	chr7:116686200-116686600	Enhancers	Right Atrium	heart
49	chr7:116686200-116686800	Enhancers	Brain Anterior Caudate	brain

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