Variant report

Variant	rs10233441
Chromosome Location	chr7:120924987-120924988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120893787..120895998-chr7:120923487..120924993,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10231005	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10241888	0.94[EUR][1000 genomes]
rs10276111	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10276127	0.87[EUR][1000 genomes]
rs10277699	0.94[EUR][1000 genomes]
rs10282303	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547959	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1547960	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2707520	0.82[ASN][1000 genomes]
rs2707521	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2952556	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155977	0.94[EUR][1000 genomes]
rs35883000	0.94[EUR][1000 genomes]
rs6947246	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6952851	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6961083	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6980043	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7778200	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7794940	0.94[EUR][1000 genomes]
rs7795061	0.94[EUR][1000 genomes]
rs7809135	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv427802	chr7:120749159-120935856	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1027619	chr7:120906437-120976630	Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv2757237	chr7:120908459-120993326	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv2759558	chr7:120908459-120993326	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120872600-120936600	Weak transcription	Psoas Muscle	Psoas
2	chr7:120888800-120937800	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:120909000-120933000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:120910200-120930000	Weak transcription	Fetal Lung	lung
5	chr7:120910200-120933200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:120920400-120927600	Strong transcription	Liver	Liver
7	chr7:120920600-120935400	Weak transcription	HSMMtube	muscle
8	chr7:120921400-120927200	Weak transcription	NHDF-Ad	bronchial
9	chr7:120921800-120925200	ZNF genes & repeats	K562	blood
10	chr7:120921800-120927200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:120922400-120925200	Strong transcription	Ovary	ovary
12	chr7:120922800-120927600	Strong transcription	Stomach Smooth Muscle	stomach
13	chr7:120923200-120925200	Weak transcription	Adipose Nuclei	Adipose
14	chr7:120923600-120925200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:120923600-120925400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:120923600-120925400	Strong transcription	Right Ventricle	heart
17	chr7:120923600-120925400	ZNF genes & repeats	HSMM	muscle
18	chr7:120923600-120926800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:120923600-120927400	Strong transcription	Aorta	Aorta
20	chr7:120923800-120926200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:120924000-120927800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr7:120924200-120927200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:120924200-120927200	Weak transcription	NHLF	lung
24	chr7:120924200-120930000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:120924400-120925600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
26	chr7:120924600-120925400	ZNF genes & repeats	Fetal Stomach	stomach
27	chr7:120924600-120925400	ZNF genes & repeats	Left Ventricle	heart
28	chr7:120924800-120925000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:120924800-120925400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:120924800-120925400	ZNF genes & repeats	Fetal Intestine Small	intestine

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