Variant report

Variant	rs10276111
Chromosome Location	chr7:120924338-120924339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120893787..120895998-chr7:120923487..120924993,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10231005	0.89[EUR][1000 genomes]
rs10233441	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10241888	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10276127	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277699	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10282303	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12534075	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs1547959	0.92[EUR][1000 genomes]
rs1547960	0.92[EUR][1000 genomes]
rs2707521	0.88[EUR][1000 genomes]
rs2952556	1.00[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs34155977	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35883000	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6947246	0.92[EUR][1000 genomes]
rs6952851	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[EUR][1000 genomes]
rs6961083	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6980043	0.92[EUR][1000 genomes]
rs7778200	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7794940	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7795061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7809135	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs798906	0.83[CEU][hapmap]
rs798907	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv427802	chr7:120749159-120935856	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1027619	chr7:120906437-120976630	Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv2757237	chr7:120908459-120993326	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv2759558	chr7:120908459-120993326	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120872600-120936600	Weak transcription	Psoas Muscle	Psoas
2	chr7:120888800-120937800	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:120909000-120933000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:120910200-120930000	Weak transcription	Fetal Lung	lung
5	chr7:120910200-120933200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:120919400-120924400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:120920400-120927600	Strong transcription	Liver	Liver
8	chr7:120920600-120924800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:120920600-120935400	Weak transcription	HSMMtube	muscle
10	chr7:120921400-120927200	Weak transcription	NHDF-Ad	bronchial
11	chr7:120921800-120925200	ZNF genes & repeats	K562	blood
12	chr7:120921800-120927200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:120922200-120924600	Strong transcription	Left Ventricle	heart
14	chr7:120922400-120925200	Strong transcription	Ovary	ovary
15	chr7:120922800-120927600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr7:120923200-120925200	Weak transcription	Adipose Nuclei	Adipose
17	chr7:120923600-120925200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:120923600-120925400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:120923600-120925400	Strong transcription	Right Ventricle	heart
20	chr7:120923600-120925400	ZNF genes & repeats	HSMM	muscle
21	chr7:120923600-120926800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:120923600-120927400	Strong transcription	Aorta	Aorta
23	chr7:120923800-120926200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:120924000-120924600	Weak transcription	Fetal Stomach	stomach
25	chr7:120924000-120924800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:120924000-120927800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
27	chr7:120924200-120927200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:120924200-120927200	Weak transcription	NHLF	lung
29	chr7:120924200-120930000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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