Variant report

Variant	rs10233812
Chromosome Location	chr7:137529184-137529185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137521731..137523551-chr7:137529090..137530870,2	K562	blood:
2	chr7:137527969..137530649-chr7:137533553..137535061,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6950955	1.00[AMR][1000 genomes]
rs6972606	1.00[AMR][1000 genomes]
rs6977641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137517800-137530400	Weak transcription	HSMMtube	muscle
2	chr7:137518800-137530400	Weak transcription	HSMM	muscle
3	chr7:137521800-137530800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:137522400-137529800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:137522400-137530200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:137525400-137529200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:137525400-137529400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:137525800-137530400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:137526600-137529200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:137527000-137529200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:137527200-137532600	Active TSS	Brain Anterior Caudate	brain
12	chr7:137527600-137529400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:137527600-137529600	Enhancers	Fetal Brain Male	brain
14	chr7:137527600-137529800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:137527600-137530600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:137528400-137530400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:137528600-137530800	Flanking Active TSS	Fetal Brain Female	brain
18	chr7:137528600-137532800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:137528800-137529200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137528800-137529400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:137528800-137530200	Active TSS	Brain Angular Gyrus	brain
22	chr7:137528800-137530600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr7:137528800-137530600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:137528800-137532800	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr7:137529000-137529200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:137529000-137529400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:137529000-137529400	Strong transcription	Osteobl	bone
28	chr7:137529000-137529600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr7:137529000-137529800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:137529000-137530200	Active TSS	Brain Cingulate Gyrus	brain

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