Variant report

Variant	rs10233833
Chromosome Location	chr7:139488570-139488571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10244528	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252208	0.84[AFR][1000 genomes]
rs10255449	0.84[AFR][1000 genomes]
rs2159484	0.85[AFR][1000 genomes]
rs4726776	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs73475943	0.83[AFR][1000 genomes]
rs73475965	1.00[EUR][1000 genomes]
rs73475978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139479000-139497400	Weak transcription	NH-A	brain
2	chr7:139480200-139490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:139480800-139489200	Weak transcription	Thymus	Thymus
4	chr7:139483400-139497600	Weak transcription	Fetal Kidney	kidney
5	chr7:139483600-139492000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:139483800-139490800	Weak transcription	HepG2	liver
7	chr7:139484800-139499000	Weak transcription	A549	lung
8	chr7:139485000-139497800	Weak transcription	NHEK	skin
9	chr7:139485000-139498000	Weak transcription	HMEC	breast
10	chr7:139485000-139502200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:139485600-139495400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:139485800-139499600	Weak transcription	Aorta	Aorta
13	chr7:139487200-139488800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:139487200-139493600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:139488200-139488600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:139488200-139489400	Strong transcription	Esophagus	oesophagus
17	chr7:139488400-139488600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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