Variant report

Variant	rs10244528
Chromosome Location	chr7:139486394-139486395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139485093..139487934-chr7:139493683..139497739,3	K562	blood:
2	chr7:139485450..139487997-chr7:139490287..139492572,3	K562	blood:
3	chr7:139485941..139488426-chr7:139662801..139664432,2	K562	blood:
4	chr7:139485125..139487946-chr7:139498173..139499742,2	K562	blood:
5	chr7:139482292..139484448-chr7:139484570..139486838,2	MCF-7	breast:
6	chr7:139482277..139484692-chr7:139485381..139489317,3	K562	blood:
7	chr7:139475082..139481855-chr7:139484359..139490017,8	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10233833	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252208	0.85[LWK][hapmap];0.85[AFR][1000 genomes]
rs10255449	0.83[LWK][hapmap];0.85[AFR][1000 genomes]
rs2159484	0.83[AFR][1000 genomes]
rs4726776	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs6958644	0.80[LWK][hapmap]
rs73475943	0.85[AFR][1000 genomes]
rs9886217	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139479000-139497400	Weak transcription	NH-A	brain
2	chr7:139480200-139490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:139480800-139489200	Weak transcription	Thymus	Thymus
4	chr7:139483400-139488200	Weak transcription	Esophagus	oesophagus
5	chr7:139483400-139497600	Weak transcription	Fetal Kidney	kidney
6	chr7:139483600-139492000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:139483800-139490800	Weak transcription	HepG2	liver
8	chr7:139484800-139488400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:139484800-139499000	Weak transcription	A549	lung
10	chr7:139485000-139487200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:139485000-139497800	Weak transcription	NHEK	skin
12	chr7:139485000-139498000	Weak transcription	HMEC	breast
13	chr7:139485000-139502200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:139485200-139488200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:139485600-139495400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:139485800-139487200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:139485800-139499600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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