Variant report

Variant	rs6958644
Chromosome Location	chr7:139496215-139496216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139496148..139499029-chr7:139499477..139502002,2	K562	blood:
2	chr7:139495484..139499018-chr7:139500374..139502989,3	K562	blood:
3	chr7:139485093..139487934-chr7:139493683..139497739,3	K562	blood:
4	chr7:139488642..139491637-chr7:139494794..139496351,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10237429	1.00[CHB][hapmap]
rs10244528	0.80[LWK][hapmap]
rs10253277	1.00[CHB][hapmap]
rs10256282	1.00[CHB][hapmap]
rs10257313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277705	1.00[CHB][hapmap]
rs1074977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534299	1.00[CHB][hapmap]
rs194152	1.00[CHB][hapmap]
rs1990354	1.00[CHB][hapmap]
rs2079845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2107900	1.00[CHB][hapmap]
rs2159484	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267679	1.00[CHB][hapmap]
rs2270163	0.85[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2361644	1.00[CHB][hapmap]
rs4311593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590360	1.00[CHB][hapmap]
rs4726715	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4726776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726815	1.00[CHB][hapmap]
rs4726838	1.00[CHB][hapmap]
rs6464800	1.00[CHB][hapmap]
rs6949027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951759	1.00[CHB][hapmap]
rs6952056	1.00[CHB][hapmap]
rs6976974	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764745	1.00[CHB][hapmap]
rs764746	1.00[CHB][hapmap]
rs9632668	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9632670	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv464733	chr7:139491967-139539218	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv608473	chr7:139491967-139539218	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6958644	DGKI	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139479000-139497400	Weak transcription	NH-A	brain
2	chr7:139483400-139497600	Weak transcription	Fetal Kidney	kidney
3	chr7:139484800-139499000	Weak transcription	A549	lung
4	chr7:139485000-139497800	Weak transcription	NHEK	skin
5	chr7:139485000-139498000	Weak transcription	HMEC	breast
6	chr7:139485000-139502200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:139485800-139499600	Weak transcription	Aorta	Aorta
8	chr7:139488600-139498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:139488800-139498400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:139489400-139498000	Weak transcription	Esophagus	oesophagus
11	chr7:139489400-139502600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:139492000-139498000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:139492800-139497400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:139493600-139497000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:139495800-139497000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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