Variant report

Variant	rs10256282
Chromosome Location	chr7:139528444-139528445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1019178	0.80[GIH][hapmap]
rs10237429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10257313	1.00[CHB][hapmap]
rs10277705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1074977	1.00[CHB][hapmap]
rs12534299	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194152	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1990354	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2079845	1.00[CHB][hapmap]
rs2107900	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2267679	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361644	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2361698	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4311593	1.00[CHB][hapmap]
rs4590360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725857	0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs4726715	1.00[LWK][hapmap]
rs4726776	1.00[CHB][hapmap]
rs4726815	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4726838	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4727013	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56147462	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464800	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6946849	0.92[ASN][1000 genomes]
rs6949027	1.00[CHB][hapmap]
rs6951759	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6952056	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs6952322	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6958644	1.00[CHB][hapmap]
rs6969517	0.80[GIH][hapmap]
rs6974960	0.92[ASN][1000 genomes]
rs6980375	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs764745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796073	0.88[JPT][hapmap]
rs7810415	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs9632668	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv464733	chr7:139491967-139539218	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv608473	chr7:139491967-139539218	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139517200-139529200	Weak transcription	Right Atrium	heart
2	chr7:139525600-139529000	Weak transcription	Ovary	ovary
3	chr7:139526200-139528800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:139526200-139529000	Weak transcription	NH-A	brain
5	chr7:139526200-139530000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:139526400-139529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:139526400-139535000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:139526600-139528600	Weak transcription	Spleen	Spleen
9	chr7:139528000-139529000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:139528200-139528600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:139528200-139528600	Enhancers	Primary T cells from cord blood	blood
12	chr7:139528200-139528600	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:139528200-139528600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr7:139528200-139528600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr7:139528200-139528600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr7:139528200-139528600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr7:139528200-139528800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:139528200-139528800	Enhancers	Placenta	Placenta
19	chr7:139528200-139528800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr7:139528200-139529000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:139528200-139529000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:139528200-139529000	Enhancers	Primary B cells from peripheral blood	blood
23	chr7:139528200-139529000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr7:139528200-139529000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr7:139528200-139529000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:139528200-139529000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr7:139528200-139529000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:139528200-139529000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr7:139528200-139529000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:139528200-139529000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:139528200-139529000	Enhancers	Fetal Thymus	thymus
32	chr7:139528200-139529000	Enhancers	Stomach Mucosa	stomach
33	chr7:139528200-139529000	Enhancers	Thymus	Thymus
34	chr7:139528200-139529200	Enhancers	Gastric	stomach
35	chr7:139528200-139529400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:139528200-139529400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:139528200-139531400	Enhancers	Fetal Kidney	kidney
38	chr7:139528200-139532000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr7:139528400-139528600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr7:139528400-139528600	Enhancers	A549	lung
41	chr7:139528400-139528800	Enhancers	Adipose Nuclei	Adipose
42	chr7:139528400-139529000	Enhancers	Liver	Liver
43	chr7:139528400-139529000	Enhancers	Colonic Mucosa	Colon
44	chr7:139528400-139529000	Enhancers	Duodenum Mucosa	Duodenum
45	chr7:139528400-139529000	Enhancers	Lung	lung
46	chr7:139528400-139529000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr7:139528400-139529000	Enhancers	GM12878-XiMat	blood
48	chr7:139528400-139529000	Enhancers	HepG2	liver
49	chr7:139528400-139529400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr7:139528400-139529400	Enhancers	Fetal Intestine Small	intestine

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