Variant report

Variant	rs10234443
Chromosome Location	chr7:121442884-121442885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10238894	0.93[AFR][1000 genomes]
rs10276802	0.88[EUR][1000 genomes]
rs17143823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121436400-121444000	Enhancers	NHEK	skin
2	chr7:121439200-121444000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:121439600-121443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121440200-121443800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:121441600-121443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121441600-121443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:121441800-121443200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:121442400-121443200	Weak transcription	HMEC	breast
10	chr7:121442600-121443000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:121442600-121443800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121442800-121443200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:121442800-121443200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:121442800-121443400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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