Variant report

Variant	rs10276802
Chromosome Location	chr7:121468918-121468919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10234443	0.88[EUR][1000 genomes]
rs10238894	0.92[ASN][1000 genomes]
rs12535129	0.81[ASN][1000 genomes]
rs12536905	0.81[ASN][1000 genomes]
rs13437930	0.81[CHB][hapmap]
rs17143823	0.88[EUR][1000 genomes]
rs3823857	0.80[ASN][1000 genomes]
rs57532793	0.92[ASN][1000 genomes]
rs61641891	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121463800-121469800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:121468800-121469000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121468800-121471200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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