Variant report

Variant	rs13437930
Chromosome Location	chr7:121521825-121521826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121521431..121523087-chr7:121651046..121653927,2	K562	blood:

Variant related genes	Relation type
ENSG00000106278	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10236018	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10241977	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627590	0.81[AMR][1000 genomes]
rs3823857	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7778338	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs960930	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1802911	chr7:121489994-121524500	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515000-121522400	Weak transcription	HMEC	breast
2	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121516200-121524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:121517400-121522400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:121517400-121523600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:121517600-121523400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:121518400-121522400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:121519400-121522400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:121519600-121523000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:121519600-121523400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:121520400-121523200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:121520800-121522800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121521000-121522000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr7:121521000-121522000	Flanking Active TSS	Fetal Brain Female	brain
15	chr7:121521000-121522200	Enhancers	Brain Anterior Caudate	brain
16	chr7:121521400-121522400	Weak transcription	Fetal Brain Male	brain
17	chr7:121521400-121523600	Enhancers	NHEK	skin
18	chr7:121521400-121525400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:121521600-121522000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:121521600-121524600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:121521600-121529800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:121521800-121522000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:121521800-121522000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:121521800-121522000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:121521800-121522000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr7:121521800-121522400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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