Variant report

Variant	rs10241977
Chromosome Location	chr7:121537710-121537711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10236018	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13437930	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627590	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3823857	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7778338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121523200-121539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:121527400-121540600	Weak transcription	Fetal Brain Female	brain
6	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
7	chr7:121530600-121539600	Weak transcription	NHEK	skin
8	chr7:121531200-121539600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:121532400-121549200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:121532600-121539600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:121532800-121543000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121534400-121538600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:121534800-121538400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:121534800-121542000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:121535800-121540800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121536600-121540800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:121537200-121538000	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:121537400-121537800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121537400-121542200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:121537600-121538200	Enhancers	Fetal Brain Male	brain
23	chr7:121537600-121542200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:121537600-121545200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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