Variant report

Variant	rs28627590
Chromosome Location	chr7:121557595-121557596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10236018	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10241977	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13437930	0.81[AMR][1000 genomes]
rs7778338	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs960930	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121550600-121561400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121552200-121558000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:121555000-121563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:121555200-121558000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:121555400-121558000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121555400-121560000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:121555400-121561200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:121555400-121565000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:121555600-121560400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:121556400-121557600	Enhancers	Brain Germinal Matrix	brain
13	chr7:121556400-121558000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121556600-121558600	Enhancers	Brain Anterior Caudate	brain
15	chr7:121557000-121557800	Enhancers	Fetal Brain Female	brain
16	chr7:121557400-121558000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:121557400-121558000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:121557400-121559400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:121557400-121565600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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