Variant report

Variant	rs3823857
Chromosome Location	chr7:121519068-121519069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121516663..121519300-chr7:121525306..121527311,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10236018	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10241977	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10276802	0.80[ASN][1000 genomes]
rs12535129	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12536905	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13437930	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7778338	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1802911	chr7:121489994-121524500	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515000-121522400	Weak transcription	HMEC	breast
2	chr7:121515400-121520800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121516200-121524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:121517400-121519600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:121517400-121521000	Weak transcription	Brain Anterior Caudate	brain
7	chr7:121517400-121521800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:121517400-121522400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:121517400-121523600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:121517600-121521400	Enhancers	Fetal Brain Male	brain
11	chr7:121517600-121523400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:121517800-121519200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:121517800-121519600	Enhancers	NHEK	skin
14	chr7:121518000-121520400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121518200-121521600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:121518400-121519200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:121518400-121521800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:121518400-121522400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr7:121518600-121519600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr7:121518600-121521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr7:121518800-121519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:121518800-121519600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:121518800-121519600	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr7:121518800-121519800	Flanking Active TSS	Fetal Brain Female	brain
25	chr7:121519000-121519200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr7:121519000-121519200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:121519000-121519600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:121519000-121519800	Enhancers	H1 Cell Line	embryonic stem cell

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