Variant report

Variant	rs10234476
Chromosome Location	chr7:111803170-111803171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111801017..111802655-chr7:111803132..111806054,2	K562	blood:
2	chr7:111788150..111790451-chr7:111802328..111804397,2	MCF-7	breast:
3	chr7:111798590..111803629-chr7:111843092..111847621,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128512	Chromatin interaction
ENSG00000198839	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046592	1.00[AMR][1000 genomes]
rs10249078	1.00[AMR][1000 genomes]
rs10249415	1.00[AMR][1000 genomes]
rs10253368	1.00[AMR][1000 genomes]
rs10254579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480693	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28524708	1.00[AMR][1000 genomes]
rs28680606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466403	1.00[AMR][1000 genomes]
rs9656191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv1016663	chr7:111622107-111813223	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111788200-111809600	Weak transcription	Aorta	Aorta
2	chr7:111796000-111813800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:111797200-111806000	Enhancers	Brain Anterior Caudate	brain
4	chr7:111797200-111806200	Enhancers	Brain Substantia Nigra	brain
5	chr7:111797400-111804800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:111798800-111805600	Enhancers	Brain Angular Gyrus	brain
7	chr7:111799000-111804800	Enhancers	Brain Cingulate Gyrus	brain
8	chr7:111799000-111809000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:111799200-111804400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:111799400-111803600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:111799400-111804200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:111799600-111803800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:111800000-111803200	Enhancers	Colon Smooth Muscle	Colon
14	chr7:111800000-111803600	Flanking Active TSS	A549	lung
15	chr7:111800000-111804000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:111800000-111804000	Enhancers	NH-A	brain
17	chr7:111800200-111803200	Enhancers	Osteobl	bone
18	chr7:111800200-111803600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:111800200-111803600	Enhancers	Brain Germinal Matrix	brain
20	chr7:111800400-111803200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr7:111800400-111803200	Enhancers	Fetal Lung	lung
22	chr7:111800400-111804200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:111800600-111803400	Enhancers	Liver	Liver
24	chr7:111800600-111804000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:111800600-111805000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:111800800-111813000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:111801400-111804200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:111801600-111803200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:111801600-111803400	Enhancers	Fetal Kidney	kidney
30	chr7:111801600-111803600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:111801600-111803600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:111801600-111804000	Enhancers	Right Ventricle	heart
33	chr7:111801800-111803600	Enhancers	Fetal Brain Male	brain
34	chr7:111802000-111803400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:111802000-111803400	Flanking Active TSS	HepG2	liver
36	chr7:111802000-111803600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:111802000-111804200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:111802200-111803200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:111802200-111803200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:111802200-111803200	Enhancers	Fetal Intestine Large	intestine
41	chr7:111802200-111803200	Enhancers	Fetal Intestine Small	intestine
42	chr7:111802200-111803400	Enhancers	Ovary	ovary
43	chr7:111802200-111803400	Enhancers	Right Atrium	heart
44	chr7:111802200-111803600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr7:111802200-111803600	Enhancers	Lung	lung
46	chr7:111802200-111803800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:111802200-111804200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:111802200-111804200	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr7:111802200-111804200	Enhancers	Psoas Muscle	Psoas
50	chr7:111802200-111804800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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