Variant report

Variant	rs6466403
Chromosome Location	chr7:111870746-111870747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10046592	1.00[AMR][1000 genomes]
rs10234476	1.00[AMR][1000 genomes]
rs10249078	1.00[AMR][1000 genomes]
rs10249415	1.00[AMR][1000 genomes]
rs10253368	1.00[AMR][1000 genomes]
rs10254579	1.00[AMR][1000 genomes]
rs10480693	1.00[AMR][1000 genomes]
rs28451586	1.00[AMR][1000 genomes]
rs28524708	1.00[AMR][1000 genomes]
rs28595023	1.00[AMR][1000 genomes]
rs28680606	1.00[AMR][1000 genomes]
rs3109104	1.00[AMR][1000 genomes]
rs3109115	1.00[AMR][1000 genomes]
rs3128393	1.00[AMR][1000 genomes]
rs3128394	1.00[AMR][1000 genomes]
rs3128396	1.00[AMR][1000 genomes]
rs3128397	1.00[AMR][1000 genomes]
rs4730518	0.88[AFR][1000 genomes]
rs9656191	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111847600-111878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:111848000-111876000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:111848000-111892800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:111853000-111873000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:111855200-111873200	Weak transcription	Esophagus	oesophagus
6	chr7:111856600-111878200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:111863600-111874200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:111863800-111879000	Weak transcription	Fetal Intestine Small	intestine
9	chr7:111863800-111900200	Weak transcription	Left Ventricle	heart
10	chr7:111864000-111872600	Weak transcription	Right Ventricle	heart
11	chr7:111864000-111873200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:111865400-111873200	Weak transcription	Pancreas	Pancrea
13	chr7:111866800-111887000	Weak transcription	HSMMtube	muscle
14	chr7:111867200-111872600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:111867400-111873800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:111867600-111872400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:111868600-111873200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:111869400-111872600	Weak transcription	HepG2	liver
19	chr7:111869600-111871400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr7:111869800-111872200	Weak transcription	Liver	Liver
21	chr7:111870400-111878200	Weak transcription	Psoas Muscle	Psoas
22	chr7:111870600-111873000	Weak transcription	Fetal Heart	heart

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