Variant report

Variant	rs3109104
Chromosome Location	chr7:112068006-112068007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10046592	1.00[AMR][1000 genomes]
rs10249415	1.00[AMR][1000 genomes]
rs10253368	1.00[AMR][1000 genomes]
rs10254579	1.00[AMR][1000 genomes]
rs10480693	1.00[AMR][1000 genomes]
rs28451586	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524708	1.00[AMR][1000 genomes]
rs28595023	1.00[AMR][1000 genomes]
rs3095041	1.00[AMR][1000 genomes]
rs3095058	1.00[AMR][1000 genomes]
rs3109115	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128394	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128396	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466403	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112063600-112070000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
4	chr7:112064400-112068200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:112064400-112068600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:112064400-112074800	Weak transcription	A549	lung
7	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
8	chr7:112066600-112068200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:112067000-112069600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:112067400-112068600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:112067600-112068800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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