Variant report

Variant	rs3128393
Chromosome Location	chr7:112078890-112078891
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10046592	1.00[AMR][1000 genomes]
rs10249415	1.00[AMR][1000 genomes]
rs10253368	1.00[AMR][1000 genomes]
rs10480693	1.00[AMR][1000 genomes]
rs28451586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524708	1.00[AMR][1000 genomes]
rs28595023	1.00[AMR][1000 genomes]
rs3095041	1.00[AMR][1000 genomes]
rs3095058	1.00[AMR][1000 genomes]
rs3109104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3109115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466403	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
4	chr7:112073800-112082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:112075600-112079600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:112077800-112079000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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