Variant report

Variant	rs28451586
Chromosome Location	chr7:112066809-112066810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112062460..112065017-chr7:112066479..112069244,3	MCF-7	breast:
2	chr7:112061522..112064132-chr7:112064997..112067327,2	MCF-7	breast:
3	chr7:112058693..112068099-chr7:112086961..112092875,22	MCF-7	breast:
4	chr7:112048030..112049795-chr7:112064934..112067558,2	MCF-7	breast:
5	chr7:112058803..112077296-chr7:112087519..112096464,50	MCF-7	breast:
6	chr7:112065886..112068626-chr7:112090543..112092431,3	K562	blood:
7	chr7:112064263..112067040-chr7:112081699..112084325,2	MCF-7	breast:
8	chr7:112060641..112062150-chr7:112065491..112067917,2	K562	blood:
9	chr7:112059129..112067568-chr7:112088387..112093703,18	K562	blood:
10	chr7:112066485..112069249-chr7:112070711..112073624,2	MCF-7	breast:
11	chr7:112060910..112062508-chr7:112065563..112067389,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10046592	1.00[AMR][1000 genomes]
rs10249415	1.00[AMR][1000 genomes]
rs10253368	1.00[AMR][1000 genomes]
rs10254579	1.00[AMR][1000 genomes]
rs10480693	1.00[AMR][1000 genomes]
rs28524708	1.00[AMR][1000 genomes]
rs28595023	1.00[AMR][1000 genomes]
rs3095041	1.00[AMR][1000 genomes]
rs3095058	1.00[AMR][1000 genomes]
rs3109104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3109115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3128397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466403	1.00[AMR][1000 genomes]
rs9656191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112063600-112070000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:112064000-112067000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:112064000-112067400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
6	chr7:112064400-112068200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:112064400-112068600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:112064400-112074800	Weak transcription	A549	lung
9	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
10	chr7:112066200-112067600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:112066400-112067200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:112066400-112067400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:112066400-112067600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:112066400-112067600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:112066600-112068200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:112066800-112067200	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links