Variant report
| Variant | rs3095041 |
|---|---|
| Chromosome Location | chr7:112169920-112169921 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000006652 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10253368 | 1.00[AMR][1000 genomes] |
| rs1227156 | 1.00[AMR][1000 genomes] |
| rs1227157 | 1.00[AMR][1000 genomes] |
| rs1227160 | 1.00[AMR][1000 genomes] |
| rs1227161 | 1.00[AMR][1000 genomes] |
| rs1227162 | 1.00[AMR][1000 genomes] |
| rs1227165 | 1.00[AMR][1000 genomes] |
| rs1227180 | 1.00[AMR][1000 genomes] |
| rs1227191 | 1.00[AMR][1000 genomes] |
| rs1237908 | 1.00[AMR][1000 genomes] |
| rs1718943 | 1.00[AMR][1000 genomes] |
| rs1796496 | 1.00[AMR][1000 genomes] |
| rs2687265 | 1.00[AMR][1000 genomes] |
| rs2687271 | 1.00[AMR][1000 genomes] |
| rs28451586 | 1.00[AMR][1000 genomes] |
| rs28595023 | 1.00[AMR][1000 genomes] |
| rs3095058 | 1.00[AMR][1000 genomes] |
| rs3109104 | 1.00[AMR][1000 genomes] |
| rs3109115 | 1.00[AMR][1000 genomes] |
| rs3128393 | 1.00[AMR][1000 genomes] |
| rs3128394 | 1.00[AMR][1000 genomes] |
| rs3128396 | 1.00[AMR][1000 genomes] |
| rs3128397 | 1.00[AMR][1000 genomes] |
| rs59930732 | 1.00[AMR][1000 genomes] |
| rs61390562 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | esv1801382 | chr7:112167436-112205264 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112169600-112170000 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr7:112169600-112171000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
