Variant report

Variant	rs1023571
Chromosome Location	chr5:57070495-57070496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1016458	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11738352	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11744708	0.97[ASN][1000 genomes]
rs11749778	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11953600	0.99[ASN][1000 genomes]
rs12514455	0.99[ASN][1000 genomes]
rs12519287	0.97[ASN][1000 genomes]
rs12520900	0.97[ASN][1000 genomes]
rs13162270	0.99[ASN][1000 genomes]
rs13164233	0.97[ASN][1000 genomes]
rs13181434	0.97[ASN][1000 genomes]
rs13181645	0.97[ASN][1000 genomes]
rs13186793	0.98[ASN][1000 genomes]
rs1347072	0.87[CHB][hapmap]
rs1347073	0.87[CHB][hapmap]
rs1432477	0.86[CHB][hapmap]
rs1432480	0.86[CHB][hapmap]
rs1476938	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1558574	0.97[ASN][1000 genomes]
rs1558575	0.97[ASN][1000 genomes]
rs17337582	0.85[ASN][1000 genomes]
rs17397629	0.99[ASN][1000 genomes]
rs2110370	0.98[ASN][1000 genomes]
rs2160056	0.98[ASN][1000 genomes]
rs2192369	1.00[ASN][1000 genomes]
rs2215813	0.86[CHB][hapmap]
rs2408851	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2539731	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2539732	0.86[CHB][hapmap]
rs2539734	0.87[CHB][hapmap]
rs2568535	0.87[CHB][hapmap]
rs28419548	0.96[ASN][1000 genomes]
rs28698102	0.96[ASN][1000 genomes]
rs34206917	0.97[ASN][1000 genomes]
rs34380989	0.97[ASN][1000 genomes]
rs34611263	0.99[ASN][1000 genomes]
rs34656967	0.98[ASN][1000 genomes]
rs34956988	0.97[ASN][1000 genomes]
rs35043723	0.98[ASN][1000 genomes]
rs35264987	0.98[ASN][1000 genomes]
rs35692246	0.91[ASN][1000 genomes]
rs36055353	0.98[ASN][1000 genomes]
rs41465246	0.98[ASN][1000 genomes]
rs4518340	0.98[ASN][1000 genomes]
rs4700219	0.99[ASN][1000 genomes]
rs56009860	0.99[ASN][1000 genomes]
rs56035618	0.98[ASN][1000 genomes]
rs62358383	0.85[ASN][1000 genomes]
rs62358431	0.97[ASN][1000 genomes]
rs62358440	0.99[ASN][1000 genomes]
rs62358441	0.99[ASN][1000 genomes]
rs6860960	0.97[ASN][1000 genomes]
rs6862267	0.97[ASN][1000 genomes]
rs6871881	0.97[ASN][1000 genomes]
rs6876970	0.97[ASN][1000 genomes]
rs6887425	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs72767449	0.97[ASN][1000 genomes]
rs757635	0.86[CHB][hapmap]
rs7735242	0.99[ASN][1000 genomes]
rs887868	0.87[CHB][hapmap]
rs9687108	0.97[ASN][1000 genomes]
rs987671	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs988658	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57062200-57075000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:57065200-57072400	Weak transcription	Osteobl	bone
3	chr5:57065400-57076000	Weak transcription	Aorta	Aorta
4	chr5:57065600-57071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:57069200-57072600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:57070000-57071200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:57070000-57074600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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