Variant report

Variant	rs10235821
Chromosome Location	chr7:78100357-78100358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10241491	0.82[EUR][1000 genomes]
rs10279188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485896	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11763781	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705477	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705478	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705481	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12705483	0.84[AMR][1000 genomes]
rs13224634	0.84[AMR][1000 genomes]
rs34174742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71573385	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71573386	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7791806	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794836	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807844	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78098400-78101800	Weak transcription	Fetal Heart	heart
2	chr7:78099000-78102400	Weak transcription	Fetal Brain Female	brain
3	chr7:78099600-78102000	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78099600-78104400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78099800-78106200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:78100000-78102000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78100000-78102000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:78100200-78101800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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