Variant report

Variant	rs11975402
Chromosome Location	chr7:78101539-78101540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78096180..78099029-chr7:78101096..78103998,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10235821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238963	0.88[CEU][hapmap]
rs10241491	0.82[EUR][1000 genomes]
rs10279188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485896	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11763781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764471	0.86[JPT][hapmap]
rs12155286	0.80[CEU][hapmap]
rs12705477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705478	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705481	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12705483	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs13224634	0.84[AMR][1000 genomes]
rs13237945	1.00[CEU][hapmap]
rs17435216	0.80[CEU][hapmap]
rs34174742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71573385	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71573386	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7791806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794836	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794954	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs7807844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78098400-78101800	Weak transcription	Fetal Heart	heart
2	chr7:78099000-78102400	Weak transcription	Fetal Brain Female	brain
3	chr7:78099600-78102000	Weak transcription	Brain Substantia Nigra	brain
4	chr7:78099600-78104400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78099800-78106200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:78100000-78102000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78100000-78102000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:78100200-78101800	Weak transcription	Brain Anterior Caudate	brain
9	chr7:78101000-78102400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:78101200-78102600	Enhancers	HSMMtube	muscle
11	chr7:78101200-78103400	Enhancers	NHDF-Ad	bronchial
12	chr7:78101400-78102200	Enhancers	NHLF	lung
13	chr7:78101400-78103000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:78101400-78103200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:78101400-78103400	Enhancers	Osteobl	bone

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