Variant report

Variant	rs10236491
Chromosome Location	chr7:150974907-150974908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:150974906-150974946	GM13976	blood:	n/a	n/a
2	ZNF263	chr7:150972799-150975095	HEK293-T-REx	kidney:	n/a	chr7:150973492-150973501 chr7:150973635-150973644

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150944159..150946342-chr7:150972887..150975150,2	MCF-7	breast:

Variant related genes	Relation type
SMARCD3	TF binding region
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10238747	1.00[AMR][1000 genomes]
rs10268063	1.00[AMR][1000 genomes]
rs11972504	1.00[AMR][1000 genomes]
rs11973593	1.00[AMR][1000 genomes]
rs11976682	1.00[AMR][1000 genomes]
rs11976868	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792441	1.00[CHB][hapmap]
rs28774985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs61453037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
2	nsv465216	chr7:150951819-150991795	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv609036	chr7:150951819-150991795	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1023436	chr7:150967147-150997692	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1022782	chr7:150970748-150992935	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3403100	chr7:150972819-150975817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150970800-150975000	Enhancers	Spleen	Spleen
2	chr7:150973800-150975000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:150974400-150975000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:150974400-150975000	Flanking Active TSS	Brain Cingulate Gyrus	brain
5	chr7:150974400-150975000	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr7:150974400-150975000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:150974400-150975000	Enhancers	Lung	lung
8	chr7:150974400-150975000	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
9	chr7:150974400-150975000	Bivalent Enhancer	Stomach Mucosa	stomach
10	chr7:150974600-150975000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr7:150974600-150975000	Bivalent Enhancer	Primary B cells from cord blood	blood
12	chr7:150974600-150975000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:150974600-150975000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:150974600-150975000	Enhancers	Esophagus	oesophagus
15	chr7:150974600-150975000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr7:150974600-150975000	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr7:150974600-150975000	Bivalent Enhancer	Fetal Stomach	stomach
18	chr7:150974600-150975000	Enhancers	Left Ventricle	heart
19	chr7:150974600-150975000	Enhancers	Pancreas	Pancrea
20	chr7:150974600-150975200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:150974600-150975200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:150974600-150975200	Enhancers	Gastric	stomach
23	chr7:150974600-150975200	Bivalent Enhancer	HepG2	liver
24	chr7:150974600-150977400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:150974600-150979000	Weak transcription	Right Atrium	heart
26	chr7:150974800-150975000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr7:150974800-150975000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
28	chr7:150974800-150975000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr7:150974800-150975000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr7:150974800-150975000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr7:150974800-150975000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr7:150974800-150975000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr7:150974800-150975000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:150974800-150975000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr7:150974800-150975000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr7:150974800-150975000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:150974800-150975000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:150974800-150975000	Bivalent/Poised TSS	Colonic Mucosa	Colon
39	chr7:150974800-150975000	Enhancers	Fetal Brain Female	brain
40	chr7:150974800-150975000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
41	chr7:150974800-150975000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
42	chr7:150974800-150975200	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr7:150974800-150975200	Enhancers	Brain Angular Gyrus	brain
44	chr7:150974800-150975200	Enhancers	Brain Anterior Caudate	brain
45	chr7:150974800-150975200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr7:150974800-150975200	Enhancers	Fetal Brain Male	brain
47	chr7:150974800-150975200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr7:150974800-150975200	Enhancers	Ovary	ovary
49	chr7:150974800-150975200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
50	chr7:150974800-150975200	Enhancers	Stomach Smooth Muscle	stomach

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