Variant report

Variant	rs11972504
Chromosome Location	chr7:150964015-150964016
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150960428..150964557-chr7:150970073..150973761,4	K562	blood:
2	chr7:150963840..150966297-chr7:150967879..150970876,2	MCF-7	breast:
3	chr7:150962569..150964522-chr7:150964727..150967253,2	MCF-7	breast:
4	chr7:150960408..150962210-chr7:150963702..150967987,4	K562	blood:
5	chr7:150957518..150961137-chr7:150961373..150964885,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10236491	1.00[AMR][1000 genomes]
rs10238747	1.00[AMR][1000 genomes]
rs10268063	1.00[AMR][1000 genomes]
rs11973593	1.00[AMR][1000 genomes]
rs11976682	1.00[AMR][1000 genomes]
rs11976868	1.00[AMR][1000 genomes]
rs61453037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv465216	chr7:150951819-150991795	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv609036	chr7:150951819-150991795	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150950400-150973400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150950600-150965200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:150950600-150967600	Weak transcription	Pancreas	Pancrea
4	chr7:150951000-150965400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:150951000-150969800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:150951000-150970800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:150951600-150968000	Weak transcription	Brain Germinal Matrix	brain
8	chr7:150951800-150967600	Weak transcription	Fetal Brain Female	brain
9	chr7:150954000-150966600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:150954000-150967200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:150959000-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:150959200-150969800	Weak transcription	Right Atrium	heart
13	chr7:150959600-150969000	Weak transcription	Fetal Lung	lung
14	chr7:150959600-150972800	Weak transcription	Ovary	ovary
15	chr7:150960000-150969200	Weak transcription	Right Ventricle	heart
16	chr7:150960200-150973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:150960400-150965000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr7:150960800-150965600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:150961400-150969000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:150961800-150966000	Weak transcription	Spleen	Spleen
21	chr7:150963000-150969000	Weak transcription	Fetal Brain Male	brain
22	chr7:150963200-150969400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:150963600-150965400	Weak transcription	Fetal Stomach	stomach
24	chr7:150963600-150966600	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:150963600-150969400	Weak transcription	Esophagus	oesophagus
26	chr7:150964000-150964200	Bivalent Enhancer	K562	blood
27	chr7:150964000-150967800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:150964000-150972000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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