Variant report

Variant	rs10238895
Chromosome Location	chr7:11005228-11005229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:11004791..11009411-chr7:11011969..11015268,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10231114	0.86[AFR][1000 genomes]
rs10240831	0.83[AFR][1000 genomes]
rs10253375	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10256300	0.91[AFR][1000 genomes]
rs10263193	0.92[AFR][1000 genomes]
rs10263323	0.90[AFR][1000 genomes]
rs10263654	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10267002	0.88[AFR][1000 genomes]
rs10267293	0.86[AFR][1000 genomes]
rs1026903	0.92[AFR][1000 genomes]
rs10269354	0.85[AFR][1000 genomes]
rs10277845	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12112182	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16876763	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16876770	0.95[AFR][1000 genomes]
rs17163856	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17163867	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17163917	0.91[AFR][1000 genomes]
rs2110377	0.80[EUR][1000 genomes]
rs2160059	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2353338	0.83[EUR][1000 genomes]
rs28542277	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28682560	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6943167	0.92[AFR][1000 genomes]
rs6955020	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6972430	0.83[EUR][1000 genomes]
rs7357146	0.95[AFR][1000 genomes]
rs7789137	0.86[AFR][1000 genomes]
rs7810016	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	esv3447442	chr7:10985761-11013298	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11004800-11005400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:11004800-11005400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:11004800-11005400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:11004800-11005400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr7:11004800-11005600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr7:11004800-11005800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:11005000-11005400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:11005000-11005600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
9	chr7:11005000-11005600	Enhancers	Dnd41	blood

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