Variant report

Variant	rs17163856
Chromosome Location	chr7:11017799-11017800
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:11017397..11019441-chr7:11039025..11040627,2	MCF-7	breast:
2	chr7:10978384..10980499-chr7:11016151..11018160,2	MCF-7	breast:
3	chr7:11016030..11019369-chr7:11044262..11046742,3	K562	blood:
4	chr7:10975906..10982429-chr7:11007978..11018673,26	K562	blood:
5	chr7:11011659..11015162-chr7:11015338..11021925,15	MCF-7	breast:
6	chr7:10472835..10475616-chr7:11015064..11018005,2	K562	blood:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction
ENSG00000271185	Chromatin interaction
ENSG00000230370	Chromatin interaction
ENSG00000189043	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10227195	0.86[EUR][1000 genomes]
rs10231114	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10238895	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10240831	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10253375	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10256300	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10263193	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10263323	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10263654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267002	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10267293	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1026903	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10269354	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10277845	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10279430	0.88[CEU][hapmap];0.82[MEX][hapmap]
rs10279863	0.83[EUR][1000 genomes]
rs10499382	1.00[CEU][hapmap]
rs12112182	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12112341	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16876763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16876770	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17163867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17163917	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17163925	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs17163954	0.88[CEU][hapmap]
rs17163958	0.88[CEU][hapmap]
rs2110377	0.97[EUR][1000 genomes]
rs2160059	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2353338	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2353343	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28378773	0.85[EUR][1000 genomes]
rs28422022	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28542277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28682560	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62438451	0.81[EUR][1000 genomes]
rs6460787	0.88[CEU][hapmap]
rs6943167	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6950505	0.82[GIH][hapmap];0.85[MEX][hapmap]
rs6954256	1.00[CEU][hapmap];0.90[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6955020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6965290	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6971841	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs6972430	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6972528	0.88[CEU][hapmap]
rs6974192	0.86[EUR][1000 genomes]
rs6974846	1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[EUR][1000 genomes]
rs6976070	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs721028	1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs7357146	0.99[AFR][1000 genomes]
rs7789137	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7795849	0.85[EUR][1000 genomes]
rs7810016	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.84[LWK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014200-11038600	Weak transcription	Small Intestine	intestine
2	chr7:11014400-11022200	Weak transcription	Esophagus	oesophagus
3	chr7:11014400-11022200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:11014400-11031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:11014400-11033200	Weak transcription	Left Ventricle	heart
6	chr7:11014600-11018000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr7:11014600-11018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:11014600-11018200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:11014600-11018200	Weak transcription	Pancreas	Pancrea
10	chr7:11014600-11018200	Weak transcription	Spleen	Spleen
11	chr7:11014600-11021800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:11014600-11022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:11014600-11022200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:11014600-11022200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:11014600-11022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:11014600-11022200	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:11014600-11022200	Weak transcription	Lung	lung
18	chr7:11014600-11032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:11014600-11035000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:11014600-11035000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:11014600-11035000	Weak transcription	Placenta	Placenta
22	chr7:11014600-11035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:11014600-11038600	Weak transcription	Psoas Muscle	Psoas
24	chr7:11014600-11045400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
26	chr7:11014800-11018200	Weak transcription	Ovary	ovary
27	chr7:11014800-11018200	Weak transcription	Right Atrium	heart
28	chr7:11014800-11020400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:11014800-11021800	Weak transcription	NH-A	brain
30	chr7:11014800-11022000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr7:11014800-11022200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:11014800-11022200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:11014800-11022200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:11014800-11022200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:11014800-11022200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:11014800-11022200	Weak transcription	Adipose Nuclei	Adipose
37	chr7:11014800-11022200	Weak transcription	Brain Anterior Caudate	brain
38	chr7:11014800-11022200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:11014800-11022200	Weak transcription	Fetal Kidney	kidney
40	chr7:11014800-11026400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:11014800-11032200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:11014800-11032600	Weak transcription	Osteobl	bone
43	chr7:11014800-11033000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:11014800-11033000	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:11014800-11033400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:11014800-11034600	Weak transcription	HMEC	breast
47	chr7:11014800-11035000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:11014800-11039200	Weak transcription	Brain Substantia Nigra	brain
49	chr7:11014800-11054200	Weak transcription	NHLF	lung
50	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach

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