Variant report

Variant	rs10239364
Chromosome Location	chr7:50914453-50914454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10230084	0.81[EUR][1000 genomes]
rs10242300	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10250894	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1862946	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1862948	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4947477	0.88[AMR][1000 genomes]
rs4947478	0.88[AMR][1000 genomes]
rs4947936	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4947937	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4947938	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4947945	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7802799	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9656704	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50907200-50916800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:50911400-50925600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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