Variant report

Variant	rs10250894
Chromosome Location	chr7:50919611-50919612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50898652..50901645-chr7:50918405..50921286,2	MCF-7	breast:
2	chr7:50902525..50906129-chr7:50919563..50922496,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10226465	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10230084	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10233389	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10234720	0.86[EUR][1000 genomes]
rs10239364	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10242300	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267953	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10282345	0.95[EUR][1000 genomes]
rs12718959	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12718961	0.86[EUR][1000 genomes]
rs17454517	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs17564264	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1862946	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862948	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2161825	0.81[CEU][hapmap]
rs28626771	0.85[ASN][1000 genomes]
rs35008384	0.83[EUR][1000 genomes]
rs4947477	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4947478	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4947934	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4947936	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947937	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947938	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947939	0.95[EUR][1000 genomes]
rs4947945	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593252	0.81[CEU][hapmap]
rs6976298	0.95[EUR][1000 genomes]
rs7350021	0.81[EUR][1000 genomes]
rs7357209	0.94[EUR][1000 genomes]
rs7779063	0.81[CEU][hapmap]
rs7781924	0.85[EUR][1000 genomes]
rs7802799	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656704	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3442268	chr7:50918158-50922356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50911400-50925600	Weak transcription	Pancreas	Pancrea
2	chr7:50917400-50920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:50918000-50920000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:50918600-50919800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:50918600-50919800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:50918600-50919800	Enhancers	Osteobl	bone
7	chr7:50918600-50920200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:50918800-50920000	Enhancers	NH-A	brain
9	chr7:50919200-50919800	Enhancers	A549	lung
10	chr7:50919200-50924200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:50919400-50920000	Enhancers	Duodenum Mucosa	Duodenum

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