Variant report

Variant	rs7779063
Chromosome Location	chr7:50933039-50933040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:50933039-50933054	MCF-7	breast:	n/a	n/a
2	POLR2A	chr7:50932956-50933156	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000228204	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10230084	0.81[CEU][hapmap]
rs1023633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10242300	0.81[AMR][1000 genomes]
rs10264737	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267953	0.80[CEU][hapmap]
rs12718959	0.81[CEU][hapmap]
rs12718972	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17454681	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17564264	0.81[CEU][hapmap]
rs1862946	0.81[AMR][1000 genomes]
rs2161825	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28626771	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35008384	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947477	0.81[AMR][1000 genomes]
rs4947478	0.81[AMR][1000 genomes]
rs4947936	0.81[AMR][1000 genomes]
rs4947937	0.81[AMR][1000 genomes]
rs4947938	0.81[AMR][1000 genomes]
rs4947945	0.81[CEU][hapmap]
rs6593249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6593251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593252	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642401	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9656704	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50926200-50934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:50926200-50935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:50927000-50935600	Weak transcription	Pancreas	Pancrea
4	chr7:50930400-50934600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:50932200-50934400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:50932400-50933200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:50932400-50933600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:50932400-50935000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:50932600-50933200	Enhancers	Left Ventricle	heart
10	chr7:50932600-50934200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:50932800-50934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:50932800-50934200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:50933000-50933200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:50933000-50933200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:50933000-50933200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:50933000-50933400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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