Variant report

Variant	rs10264737
Chromosome Location	chr7:50933370-50933371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10233389	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1023633	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10267953	0.88[CEU][hapmap]
rs12718972	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17454517	0.81[CEU][hapmap]
rs17454681	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2161825	0.92[CEU][hapmap]
rs28626771	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35008384	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593249	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6593251	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593252	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7779063	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9642401	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv524131	chr7:50933370-50961303	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527462	chr7:50933370-50989383	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50926200-50934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:50926200-50935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:50927000-50935600	Weak transcription	Pancreas	Pancrea
4	chr7:50930400-50934600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:50932200-50934400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:50932400-50933600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:50932400-50935000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:50932600-50934200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:50932800-50934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:50932800-50934200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:50933000-50933400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:50933200-50933400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:50933200-50933400	Bivalent Enhancer	NHEK	skin
14	chr7:50933200-50934200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:50933200-50934200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:50933200-50934200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:50933200-50934400	Weak transcription	Left Ventricle	heart
18	chr7:50933200-50936400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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