Variant report

Variant	rs2161825
Chromosome Location	chr7:50932580-50932581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1016514	0.97[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10230084	0.81[CEU][hapmap]
rs1023633	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10249802	0.85[AFR][1000 genomes]
rs10264737	0.92[CEU][hapmap]
rs10267953	0.80[CEU][hapmap]
rs12718959	0.81[CEU][hapmap]
rs12718972	0.86[EUR][1000 genomes]
rs17564264	0.81[CEU][hapmap]
rs35008384	0.81[EUR][1000 genomes]
rs4947945	0.81[CEU][hapmap]
rs6593249	0.86[EUR][1000 genomes]
rs6593251	0.86[EUR][1000 genomes]
rs6593252	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7779063	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7789720	0.87[AFR][1000 genomes]
rs9642401	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50926200-50934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:50926200-50935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:50927000-50935600	Weak transcription	Pancreas	Pancrea
4	chr7:50930400-50934600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:50932200-50932600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:50932200-50932800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:50932200-50934400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:50932400-50932600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:50932400-50933200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:50932400-50933600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:50932400-50935000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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