Variant report

Variant	rs10239663
Chromosome Location	chr7:112033033-112033034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112030505..112033411-chr7:112090112..112091685,2	MCF-7	breast:
2	chr7:112032001..112033811-chr7:112035670..112039221,3	MCF-7	breast:
3	chr7:112023462..112026199-chr7:112030712..112034136,5	MCF-7	breast:
4	chr7:111850231..111853782-chr7:112032412..112034689,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10046468	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224789	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227494	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232109	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232110	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237213	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243005	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248314	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251698	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253148	0.86[ASN][1000 genomes]
rs10261860	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266976	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269057	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274016	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10275406	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276140	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276369	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276727	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10276853	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278420	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281805	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282279	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1047550	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1047551	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530699	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532522	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534930	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537934	1.00[ASN][1000 genomes]
rs17159353	1.00[ASN][1000 genomes]
rs17159566	0.86[ASN][1000 genomes]
rs17159604	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402962	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17491423	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2189289	1.00[ASN][1000 genomes]
rs2285732	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532417	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894646	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109106	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109108	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109116	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3109117	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3128395	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35134215	1.00[ASN][1000 genomes]
rs41281060	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56132236	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341778	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214357	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60127009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60691495	1.00[ASN][1000 genomes]
rs61669542	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67064485	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67604537	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943448	1.00[ASN][1000 genomes]
rs6944498	1.00[ASN][1000 genomes]
rs6947063	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949234	1.00[ASN][1000 genomes]
rs6950282	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964483	1.00[ASN][1000 genomes]
rs6965896	1.00[ASN][1000 genomes]
rs6969176	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6971023	1.00[ASN][1000 genomes]
rs73192992	1.00[ASN][1000 genomes]
rs73192993	1.00[ASN][1000 genomes]
rs73193000	1.00[ASN][1000 genomes]
rs73195204	1.00[ASN][1000 genomes]
rs73195211	1.00[ASN][1000 genomes]
rs73195218	1.00[ASN][1000 genomes]
rs73195220	1.00[ASN][1000 genomes]
rs73195223	1.00[ASN][1000 genomes]
rs73195224	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73195225	1.00[ASN][1000 genomes]
rs73197338	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73197343	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197349	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197363	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197366	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197367	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197376	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786555	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790065	1.00[ASN][1000 genomes]
rs7806811	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810149	1.00[ASN][1000 genomes]
rs7810734	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812188	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112032400-112035400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:112032600-112037600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr7:112032600-112037800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:112032800-112033400	Enhancers	Fetal Brain Female	brain
5	chr7:112032800-112033600	Enhancers	Dnd41	blood
6	chr7:112032800-112037200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:112032800-112037400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:112032800-112037400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:112032800-112037600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:112032800-112037600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:112032800-112037600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:112032800-112037800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:112032800-112037800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:112032800-112038000	Weak transcription	Primary T cells from cord blood	blood
15	chr7:112032800-112038000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:112032800-112038000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:112032800-112038000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:112032800-112038000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:112032800-112038000	Weak transcription	Fetal Thymus	thymus
20	chr7:112033000-112036600	Weak transcription	Fetal Brain Male	brain

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