Variant report

Variant	rs73197376
Chromosome Location	chr7:112049743-112049744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr7:112049554-112051862	SK-N-SH	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:112049730..112052171-chr7:112053926..112056276,3	K562	blood:
2	chr7:112045125..112048422-chr7:112049738..112053855,5	K562	blood:
3	chr7:112048671..112054554-chr7:112088966..112092653,8	K562	blood:
4	chr7:112049693..112052446-chr7:112089375..112092902,3	K562	blood:
5	chr7:111592856..111595719-chr7:112049563..112051825,3	MCF-7	breast:
6	chr7:112045125..112047686-chr7:112049738..112051786,2	K562	blood:
7	chr7:112047884..112050486-chr7:112089235..112093334,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226851	TF binding region
ENSG00000222346	Chromatin interaction
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10046468	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224789	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227494	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232109	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232110	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237213	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239663	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10243005	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246422	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248314	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251698	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253148	0.86[ASN][1000 genomes]
rs10261860	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266976	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269057	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274016	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10275406	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276140	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276369	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276727	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10276853	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278420	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281805	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282279	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1047550	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1047551	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530699	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532522	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534930	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537934	1.00[ASN][1000 genomes]
rs17159353	1.00[ASN][1000 genomes]
rs17159566	0.86[ASN][1000 genomes]
rs17159604	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17402962	1.00[ASN][1000 genomes]
rs17491423	1.00[ASN][1000 genomes]
rs2189289	1.00[ASN][1000 genomes]
rs2285732	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532417	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894646	1.00[ASN][1000 genomes]
rs3109106	1.00[ASN][1000 genomes]
rs3109108	1.00[ASN][1000 genomes]
rs3109116	1.00[ASN][1000 genomes]
rs3109117	1.00[ASN][1000 genomes]
rs3128395	1.00[ASN][1000 genomes]
rs35134215	1.00[ASN][1000 genomes]
rs41281060	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56132236	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341778	1.00[ASN][1000 genomes]
rs57214357	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60127009	1.00[ASN][1000 genomes]
rs60691495	1.00[ASN][1000 genomes]
rs61669542	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67064485	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67604537	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943448	1.00[ASN][1000 genomes]
rs6944498	1.00[ASN][1000 genomes]
rs6947063	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949234	1.00[ASN][1000 genomes]
rs6950282	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964483	1.00[ASN][1000 genomes]
rs6965896	1.00[ASN][1000 genomes]
rs6969176	1.00[ASN][1000 genomes]
rs6971023	1.00[ASN][1000 genomes]
rs73192992	1.00[ASN][1000 genomes]
rs73192993	1.00[ASN][1000 genomes]
rs73193000	1.00[ASN][1000 genomes]
rs73195204	1.00[ASN][1000 genomes]
rs73195211	1.00[ASN][1000 genomes]
rs73195218	1.00[ASN][1000 genomes]
rs73195220	1.00[ASN][1000 genomes]
rs73195223	1.00[ASN][1000 genomes]
rs73195224	1.00[ASN][1000 genomes]
rs73195225	1.00[ASN][1000 genomes]
rs73197338	1.00[ASN][1000 genomes]
rs73197343	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197349	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197363	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197366	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197367	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786555	1.00[ASN][1000 genomes]
rs7790065	1.00[ASN][1000 genomes]
rs7806811	1.00[ASN][1000 genomes]
rs7810149	1.00[ASN][1000 genomes]
rs7810734	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812188	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112046000-112050600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:112046000-112050800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:112046000-112051000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:112046000-112060400	Weak transcription	Brain Angular Gyrus	brain
5	chr7:112048400-112050600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:112048800-112050200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:112049600-112049800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:112049600-112051200	Enhancers	Fetal Lung	lung

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