Variant report

Variant	rs10239715
Chromosome Location	chr7:101210730-101210731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101206824..101211807-chr7:101212192..101215584,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYL10-1	chr7:101208599-101210760	XLOC_006548
2	lnc-MYL10-1	chr7:101208597-101210760	ENSG00000233123
3	lnc-MYL10-1	chr7:101208607-101210760	NONHSAT122471
4	lnc-MYL10-1	chr7:101208587-101210760	NR_103747

Variant related genes	Relation type
ENSG00000233123	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10269590	1.00[ASN][1000 genomes]
rs10270145	1.00[ASN][1000 genomes]
rs10278534	1.00[ASN][1000 genomes]
rs10447812	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772618	1.00[ASN][1000 genomes]
rs12667267	1.00[ASN][1000 genomes]
rs1619382	1.00[ASN][1000 genomes]
rs1636440	1.00[ASN][1000 genomes]
rs1636441	1.00[ASN][1000 genomes]
rs1636443	1.00[ASN][1000 genomes]
rs1722218	1.00[ASN][1000 genomes]
rs1722224	1.00[ASN][1000 genomes]
rs1722226	1.00[ASN][1000 genomes]
rs1722229	1.00[ASN][1000 genomes]
rs2529183	1.00[ASN][1000 genomes]
rs4263675	1.00[ASN][1000 genomes]
rs4276617	1.00[ASN][1000 genomes]
rs4436052	1.00[ASN][1000 genomes]
rs4490765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535653	1.00[ASN][1000 genomes]
rs4602818	1.00[ASN][1000 genomes]
rs4642556	1.00[ASN][1000 genomes]
rs4727503	1.00[ASN][1000 genomes]
rs4727504	1.00[ASN][1000 genomes]
rs4727505	1.00[ASN][1000 genomes]
rs4727506	1.00[ASN][1000 genomes]
rs4729747	1.00[ASN][1000 genomes]
rs56381219	1.00[ASN][1000 genomes]
rs62466309	1.00[ASN][1000 genomes]
rs62466310	1.00[ASN][1000 genomes]
rs62466312	1.00[ASN][1000 genomes]
rs62466343	1.00[ASN][1000 genomes]
rs62466344	1.00[ASN][1000 genomes]
rs62466345	1.00[ASN][1000 genomes]
rs62466346	1.00[ASN][1000 genomes]
rs62466347	1.00[ASN][1000 genomes]
rs62466348	1.00[ASN][1000 genomes]
rs62466349	1.00[ASN][1000 genomes]
rs62466351	1.00[ASN][1000 genomes]
rs62466354	1.00[ASN][1000 genomes]
rs62466355	1.00[ASN][1000 genomes]
rs62466356	1.00[ASN][1000 genomes]
rs62466357	1.00[ASN][1000 genomes]
rs62466358	1.00[ASN][1000 genomes]
rs62467460	1.00[ASN][1000 genomes]
rs62467463	1.00[ASN][1000 genomes]
rs62467464	1.00[ASN][1000 genomes]
rs62467465	1.00[ASN][1000 genomes]
rs62467466	1.00[ASN][1000 genomes]
rs62467468	1.00[ASN][1000 genomes]
rs62467469	1.00[ASN][1000 genomes]
rs6957219	1.00[ASN][1000 genomes]
rs6960571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757820	1.00[ASN][1000 genomes]
rs757821	1.00[ASN][1000 genomes]
rs757822	1.00[ASN][1000 genomes]
rs757823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757824	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785622	1.00[ASN][1000 genomes]
rs7799319	1.00[ASN][1000 genomes]
rs7809926	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811421	1.00[ASN][1000 genomes]
rs848644	1.00[ASN][1000 genomes]
rs848645	1.00[ASN][1000 genomes]
rs848646	1.00[ASN][1000 genomes]
rs848654	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831078	chr7:101094945-101257486	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv1796652	chr7:101156017-101219459	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101209800-101212200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:101210000-101210800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:101210000-101210800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:101210200-101210800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr7:101210400-101210800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:101210400-101210800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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